miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 7802 0.69 0.253198
Target:  5'- cCGcCCCUGCCGcgGCagCCGGccgccucGGCGCCGg -3'
miRNA:   3'- -GC-GGGACGGCa-CG--GGCCca-----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 7839 0.67 0.335794
Target:  5'- uCGCCgUGUCuccgGCaCCGccGGUGGCGCCu -3'
miRNA:   3'- -GCGGgACGGca--CG-GGC--CCACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 10160 0.67 0.328792
Target:  5'- uCGCCCgagcagGCCG-GCCCGcu--GCGCCGg -3'
miRNA:   3'- -GCGGGa-----CGGCaCGGGCccacCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 10555 0.79 0.047511
Target:  5'- gCGCCCgGCCG-GCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- -GCGGGaCGGCaCG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 10586 0.66 0.38006
Target:  5'- gGCCCccCCGcgcGCgCGGGccGGCGCCGg -3'
miRNA:   3'- gCGGGacGGCa--CGgGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 10685 0.71 0.179451
Target:  5'- uCGCCCUccgGUCGcGCCCGGGcgcggcccGCGCCGg -3'
miRNA:   3'- -GCGGGA---CGGCaCGGGCCCac------CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 11314 0.74 0.113761
Target:  5'- gCGCCC-GCCGagGCCggCGGGcggcUGGCGCCGg -3'
miRNA:   3'- -GCGGGaCGGCa-CGG--GCCC----ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 11670 0.68 0.295412
Target:  5'- gGCCCcaGCCGaGCCCGcGGcGGCcgucGCCGg -3'
miRNA:   3'- gCGGGa-CGGCaCGGGC-CCaCCG----CGGC- -5'
6424 5' -67.3 NC_001847.1 + 12070 0.67 0.335794
Target:  5'- aCGCCgagGCCGcggagcGCCgCGGGUccGGCGCCc -3'
miRNA:   3'- -GCGGga-CGGCa-----CGG-GCCCA--CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 12690 0.66 0.403611
Target:  5'- aCGcCCCUGCCcaGCCuCaGGUagaGGUGCCGc -3'
miRNA:   3'- -GC-GGGACGGcaCGG-GcCCA---CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 12915 0.68 0.301871
Target:  5'- gCGCCgUGCC--GCCgCGGG-GGCGCgCGu -3'
miRNA:   3'- -GCGGgACGGcaCGG-GCCCaCCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 13111 0.66 0.387808
Target:  5'- uGUCgCgGCCGgggcGCgCGGGcGGCGCCGc -3'
miRNA:   3'- gCGG-GaCGGCa---CGgGCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 14312 0.69 0.236681
Target:  5'- gGCCCcgcucCCGcUGCUCGcGGUGGgGCCGg -3'
miRNA:   3'- gCGGGac---GGC-ACGGGC-CCACCgCGGC- -5'
6424 5' -67.3 NC_001847.1 + 15060 0.66 0.403611
Target:  5'- gCGCCauCUGaCCGgcgGCCCGGGgauCGCCu -3'
miRNA:   3'- -GCGG--GAC-GGCa--CGGGCCCaccGCGGc -5'
6424 5' -67.3 NC_001847.1 + 15521 0.67 0.335794
Target:  5'- gGCUCgGCgGgaGCCgCGGGcugcUGGCGCCGg -3'
miRNA:   3'- gCGGGaCGgCa-CGG-GCCC----ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 15543 0.71 0.183709
Target:  5'- gGCCUcGUCGU-CgCCGGGUGGCGCgGg -3'
miRNA:   3'- gCGGGaCGGCAcG-GGCCCACCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 15924 0.7 0.231379
Target:  5'- uGCCCcGCCGc-CCCGcGGUggccgcGGCGCCGa -3'
miRNA:   3'- gCGGGaCGGCacGGGC-CCA------CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 15983 0.67 0.350121
Target:  5'- uGCCCcGCCGc-CCCGcGGcggccgcGGCGCCGa -3'
miRNA:   3'- gCGGGaCGGCacGGGC-CCa------CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 16475 0.69 0.24759
Target:  5'- gGCCCaacccccGCCcUGCCUGGGUGGgGCa- -3'
miRNA:   3'- gCGGGa------CGGcACGGGCCCACCgCGgc -5'
6424 5' -67.3 NC_001847.1 + 18230 0.68 0.308439
Target:  5'- gGCUCUcgGCgCGUGCUCGcGUGGCGCUu -3'
miRNA:   3'- gCGGGA--CG-GCACGGGCcCACCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.