miRNA display CGI


Results 21 - 40 of 269 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 129356 0.66 0.395658
Target:  5'- gCGCggUGCCGgGCCCGGGgcuaGaCGCCGc -3'
miRNA:   3'- -GCGggACGGCaCGGGCCCac--C-GCGGC- -5'
6424 5' -67.3 NC_001847.1 + 129322 0.66 0.38006
Target:  5'- gGgCCUGCCGgGCgCGGGgccgggGGCGuUCGg -3'
miRNA:   3'- gCgGGACGGCaCGgGCCCa-----CCGC-GGC- -5'
6424 5' -67.3 NC_001847.1 + 128452 0.71 0.175281
Target:  5'- gGCCCUGCgCGcgcGCCCGGccGGCcGCCGc -3'
miRNA:   3'- gCGGGACG-GCa--CGGGCCcaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 128358 0.68 0.308439
Target:  5'- aCGCgCUGCUGgugGCCaCGGaGcagcUGGCGCCu -3'
miRNA:   3'- -GCGgGACGGCa--CGG-GCC-C----ACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 128019 0.66 0.387808
Target:  5'- uGCUCacggGCCaGgaggaGCCCGGccGUGGCGCCu -3'
miRNA:   3'- gCGGGa---CGG-Ca----CGGGCC--CACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 127029 0.66 0.411664
Target:  5'- cCGCCCcGCgGUuguacgggGCCacguGGGUcGGCGCCu -3'
miRNA:   3'- -GCGGGaCGgCA--------CGGg---CCCA-CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 126666 0.66 0.395658
Target:  5'- cCGCCCccgGCCGagcgccgccCCCGGcccGGCGCCGc -3'
miRNA:   3'- -GCGGGa--CGGCac-------GGGCCca-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 124561 0.71 0.181144
Target:  5'- gGCCCgcgcgcgcggggggGCCGccgGCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- gCGGGa-------------CGGCa--CG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 124290 0.66 0.403611
Target:  5'- gCGCCC-GCCGcGCCuCGGccacGCGCCGc -3'
miRNA:   3'- -GCGGGaCGGCaCGG-GCCcac-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 123830 0.66 0.372417
Target:  5'- cCGCCC-GCCG-GCCuCGGcG-GGCGCg- -3'
miRNA:   3'- -GCGGGaCGGCaCGG-GCC-CaCCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 123610 0.66 0.393292
Target:  5'- aGCCCaGCCaaggcggcaaacucgGCCgGGGcGGCGCCc -3'
miRNA:   3'- gCGGGaCGGca-------------CGGgCCCaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 123463 0.66 0.38006
Target:  5'- gGCCCggcgacgGCCGccgcggGCUCGGcUGGgGCCGc -3'
miRNA:   3'- gCGGGa------CGGCa-----CGGGCCcACCgCGGC- -5'
6424 5' -67.3 NC_001847.1 + 122910 0.69 0.24759
Target:  5'- aGCCCUcGCCGU--UCGGGUGugcgcGCGCCGc -3'
miRNA:   3'- gCGGGA-CGGCAcgGGCCCAC-----CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 122770 0.67 0.342188
Target:  5'- gGUCCggGCCGUGCgcuccagcaggcuCCGGuGgGGCGCUGa -3'
miRNA:   3'- gCGGGa-CGGCACG-------------GGCC-CaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 122634 0.68 0.282817
Target:  5'- uCGCCUUcGUCGUcugGCCCGGGUucuuGGcCGCCc -3'
miRNA:   3'- -GCGGGA-CGGCA---CGGGCCCA----CC-GCGGc -5'
6424 5' -67.3 NC_001847.1 + 121778 0.66 0.395658
Target:  5'- gCGCUCauuUGCCGUGUagCCGGGcgccucUGaGUGCCGu -3'
miRNA:   3'- -GCGGG---ACGGCACG--GGCCC------AC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 121758 0.68 0.301871
Target:  5'- gGCCCgcGgCGcGCCCGGacGUGcGCGCCGu -3'
miRNA:   3'- gCGGGa-CgGCaCGGGCC--CAC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 121670 0.66 0.403611
Target:  5'- cCGCCgCUGUgGggugcgGCCCGagcaGGUGcGCGCCc -3'
miRNA:   3'- -GCGG-GACGgCa-----CGGGC----CCAC-CGCGGc -5'
6424 5' -67.3 NC_001847.1 + 120158 0.67 0.321899
Target:  5'- gCGCUCgcgaUGCgGUGCCUGuugcucuggauGGUGGUGCUGg -3'
miRNA:   3'- -GCGGG----ACGgCACGGGC-----------CCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 119504 0.66 0.395658
Target:  5'- aGCCCgaGCCcgaGCCCGGaGgGGCGgCGg -3'
miRNA:   3'- gCGGGa-CGGca-CGGGCC-CaCCGCgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.