miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 135067 0.67 0.321899
Target:  5'- aGCCCagaGCgG-GCCCGGGcccgccGCGCCGa -3'
miRNA:   3'- gCGGGa--CGgCaCGGGCCCac----CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 135021 0.71 0.179451
Target:  5'- gGCCCgcggGCgGgGCCgGGGcgcggGGCGCCGg -3'
miRNA:   3'- gCGGGa---CGgCaCGGgCCCa----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 134918 0.66 0.372417
Target:  5'- gGCgCgagGCCcggGCUCGGGcccccgGGCGCCGg -3'
miRNA:   3'- gCGgGa--CGGca-CGGGCCCa-----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 134881 0.69 0.236681
Target:  5'- gGCCC--CCGgGCUCGGGccccugGGCGCCGg -3'
miRNA:   3'- gCGGGacGGCaCGGGCCCa-----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 134205 0.66 0.38006
Target:  5'- uCGUCCccggGCgCGgGCUCGGGcuucccGGCGCCGg -3'
miRNA:   3'- -GCGGGa---CG-GCaCGGGCCCa-----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 134177 0.77 0.065943
Target:  5'- aGCCCcGCCG-GCCCGGGUgccGGCGCa- -3'
miRNA:   3'- gCGGGaCGGCaCGGGCCCA---CCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 134052 0.68 0.301871
Target:  5'- cCGCCCgcgGCCGcggcGCCCGGcGUGGa-CUGg -3'
miRNA:   3'- -GCGGGa--CGGCa---CGGGCC-CACCgcGGC- -5'
6424 5' -67.3 NC_001847.1 + 133192 0.71 0.190706
Target:  5'- cCGCCCggcgaggacgagcGCCGgcgGCCCGaGUGGCcGCCGc -3'
miRNA:   3'- -GCGGGa------------CGGCa--CGGGCcCACCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 133154 0.71 0.201641
Target:  5'- uGCUCUacgacCCGcUGCCCGGGgaGGCGCUGg -3'
miRNA:   3'- gCGGGAc----GGC-ACGGGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 132715 0.73 0.13162
Target:  5'- gGCCCUGCCGgccGCCgCGGG-GGCcCCu -3'
miRNA:   3'- gCGGGACGGCa--CGG-GCCCaCCGcGGc -5'
6424 5' -67.3 NC_001847.1 + 132476 0.66 0.38006
Target:  5'- aGCCgaUGCCGgccgaGCcgCCGGGcgaaGGCGCCGc -3'
miRNA:   3'- gCGGg-ACGGCa----CG--GGCCCa---CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 132364 0.7 0.216072
Target:  5'- gGCCCUGgaGgccGCCggCGGG-GGCGCCGg -3'
miRNA:   3'- gCGGGACggCa--CGG--GCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 132280 0.69 0.270652
Target:  5'- gGCCCgcgcGUCG-GCCUGGGcgcUGGCGCgCGc -3'
miRNA:   3'- gCGGGa---CGGCaCGGGCCC---ACCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 132147 0.71 0.175281
Target:  5'- gCGCUgCUGCCGcGCa-GGGUGGgGCCGg -3'
miRNA:   3'- -GCGG-GACGGCaCGggCCCACCgCGGC- -5'
6424 5' -67.3 NC_001847.1 + 132051 0.69 0.253198
Target:  5'- gCGgCCUGCCG-GCCgCGGccUGcGCGCCGg -3'
miRNA:   3'- -GCgGGACGGCaCGG-GCCc-AC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 131897 0.68 0.281582
Target:  5'- gCGcCCCUGCCGccggcgagcacgGCgCGGGcGGCGCgCGa -3'
miRNA:   3'- -GC-GGGACGGCa-----------CGgGCCCaCCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 131799 0.67 0.335794
Target:  5'- aCGCCCccaugGCCua-CCCGGaGgccGGCGCCGg -3'
miRNA:   3'- -GCGGGa----CGGcacGGGCC-Ca--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 131152 0.73 0.134837
Target:  5'- gCGCCCcgcgggGCCGcgcGCCCGGGcccccGGCGCCc -3'
miRNA:   3'- -GCGGGa-----CGGCa--CGGGCCCa----CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 130280 0.66 0.38006
Target:  5'- cCGCgUgGCUGUGCCCGucccGGCGCCa -3'
miRNA:   3'- -GCGgGaCGGCACGGGCcca-CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 130271 0.66 0.38006
Target:  5'- gGCCCUGCCGcUGCCCGc----CGCCc -3'
miRNA:   3'- gCGGGACGGC-ACGGGCccaccGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.