miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 114495 0.73 0.128473
Target:  5'- cCGCCCUGCUGaGCCCcuuUGGCGCCu -3'
miRNA:   3'- -GCGGGACGGCaCGGGcccACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 29902 0.73 0.128473
Target:  5'- gGCCCUGCCGgccGCCgCGGGgGGCcCCu -3'
miRNA:   3'- gCGGGACGGCa--CGG-GCCCaCCGcGGc -5'
6424 5' -67.3 NC_001847.1 + 260 0.73 0.13162
Target:  5'- gCGCCCagggGCCcgaGCCCGGG-GGCcGCCGa -3'
miRNA:   3'- -GCGGGa---CGGca-CGGGCCCaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 103073 0.73 0.13162
Target:  5'- gCGCCCagggGCCcgaGCCCGGG-GGCcGCCGa -3'
miRNA:   3'- -GCGGGa---CGGca-CGGGCCCaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 132715 0.73 0.13162
Target:  5'- gGCCCUGCCGgccGCCgCGGG-GGCcCCu -3'
miRNA:   3'- gCGGGACGGCa--CGG-GCCCaCCGcGGc -5'
6424 5' -67.3 NC_001847.1 + 28339 0.73 0.134837
Target:  5'- gCGCCCcgcgggGCCGcgcGCCCGGGcccccGGCGCCc -3'
miRNA:   3'- -GCGGGa-----CGGCa--CGGGCCCa----CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 131152 0.73 0.134837
Target:  5'- gCGCCCcgcgggGCCGcgcGCCCGGGcccccGGCGCCc -3'
miRNA:   3'- -GCGGGa-----CGGCa--CGGGCCCa----CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 700 0.73 0.138127
Target:  5'- uGCCCUGCCGcaaguuuaUGCUguaucugaugCGcGGUGGUGCCGu -3'
miRNA:   3'- gCGGGACGGC--------ACGG----------GC-CCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 19613 0.73 0.144928
Target:  5'- gGCCCgaGCuCGgGCCCGGGgcgccGGCGUCGg -3'
miRNA:   3'- gCGGGa-CG-GCaCGGGCCCa----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 49220 0.72 0.148087
Target:  5'- gCGUCCUGauugGUGCUCcacgcaaacggcgGGGUGGCGCCGg -3'
miRNA:   3'- -GCGGGACgg--CACGGG-------------CCCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 33335 0.72 0.148442
Target:  5'- gGCCUcGCg--GCCUGGGUGGCGCUGc -3'
miRNA:   3'- gCGGGaCGgcaCGGGCCCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 103903 0.72 0.155704
Target:  5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3'
miRNA:   3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 1090 0.72 0.155704
Target:  5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3'
miRNA:   3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 32354 0.72 0.159454
Target:  5'- gGCCCaGCCcccGCgCGGGggGGCGCCGg -3'
miRNA:   3'- gCGGGaCGGca-CGgGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 18398 0.72 0.159454
Target:  5'- uCGCCCUGCgG-GCCCGcGG-GGCuGUCGa -3'
miRNA:   3'- -GCGGGACGgCaCGGGC-CCaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 30894 0.72 0.163286
Target:  5'- uCGCCCgGCCGcaGCCCGGuGaGGCGCgCGc -3'
miRNA:   3'- -GCGGGaCGGCa-CGGGCC-CaCCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 52516 0.72 0.1672
Target:  5'- gCGCgCgGCCGcgcgGCCCGGGggaUGGuCGCCGg -3'
miRNA:   3'- -GCGgGaCGGCa---CGGGCCC---ACC-GCGGC- -5'
6424 5' -67.3 NC_001847.1 + 64449 0.72 0.1672
Target:  5'- gCGCCCccGCCGccGCCCGcGGcGGCGCgGg -3'
miRNA:   3'- -GCGGGa-CGGCa-CGGGC-CCaCCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 132147 0.71 0.175281
Target:  5'- gCGCUgCUGCCGcGCa-GGGUGGgGCCGg -3'
miRNA:   3'- -GCGG-GACGGCaCGggCCCACCgCGGC- -5'
6424 5' -67.3 NC_001847.1 + 61959 0.71 0.175281
Target:  5'- uGCCCgcgcGCCGUGCCCGcc-GGCGCgGc -3'
miRNA:   3'- gCGGGa---CGGCACGGGCccaCCGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.