miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 76641 0.71 0.175281
Target:  5'- uGCCCgucGCCcUGCCCGaGGgcggggagGGCGCCu -3'
miRNA:   3'- gCGGGa--CGGcACGGGC-CCa-------CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 86750 0.71 0.175281
Target:  5'- cCGCUUUGCCGccgagGCCCGGcccggcGGCGCCa -3'
miRNA:   3'- -GCGGGACGGCa----CGGGCCca----CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 128452 0.71 0.175281
Target:  5'- gGCCCUGCgCGcgcGCCCGGccGGCcGCCGc -3'
miRNA:   3'- gCGGGACG-GCa--CGGGCCcaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 38202 0.71 0.175281
Target:  5'- aGCgCCUGCCGcccgcggagGCCCGGGccGcGCGCCu -3'
miRNA:   3'- gCG-GGACGGCa--------CGGGCCCa-C-CGCGGc -5'
6424 5' -67.3 NC_001847.1 + 135021 0.71 0.179451
Target:  5'- gGCCCgcggGCgGgGCCgGGGcgcggGGCGCCGg -3'
miRNA:   3'- gCGGGa---CGgCaCGGgCCCa----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 113498 0.71 0.179451
Target:  5'- uCGCCCUccgGUCGcGCCCGGGcgcggcccGCGCCGg -3'
miRNA:   3'- -GCGGGA---CGGCaCGGGCCCac------CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 32208 0.71 0.179451
Target:  5'- gGCCCgcggGCgGgGCCgGGGcgcggGGCGCCGg -3'
miRNA:   3'- gCGGGa---CGgCaCGGgCCCa----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 79850 0.71 0.179451
Target:  5'- aCGCCgcugggacacgaCUGCCGcccGUCCGGGcccGGCGCCGu -3'
miRNA:   3'- -GCGG------------GACGGCa--CGGGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 10685 0.71 0.179451
Target:  5'- uCGCCCUccgGUCGcGCCCGGGcgcggcccGCGCCGg -3'
miRNA:   3'- -GCGGGA---CGGCaCGGGCCCac------CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 124561 0.71 0.181144
Target:  5'- gGCCCgcgcgcgcggggggGCCGccgGCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- gCGGGa-------------CGGCa--CG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 21748 0.71 0.181144
Target:  5'- gGCCCgcgcgcgcggggggGCCGccgGCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- gCGGGa-------------CGGCa--CG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 42035 0.71 0.181144
Target:  5'- uCGCCCgGUacguagacuggcucgUGUGCCUGGGgcUGGUGCCGc -3'
miRNA:   3'- -GCGGGaCG---------------GCACGGGCCC--ACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 15543 0.71 0.183709
Target:  5'- gGCCUcGUCGU-CgCCGGGUGGCGCgGg -3'
miRNA:   3'- gCGGGaCGGCAcG-GGCCCACCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 939 0.71 0.188055
Target:  5'- aGCCCgagcCCGcGCCCGGGgacgacuGCGCCGg -3'
miRNA:   3'- gCGGGac--GGCaCGGGCCCac-----CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 103752 0.71 0.188055
Target:  5'- aGCCCgagcCCGcGCCCGGGgacgacuGCGCCGg -3'
miRNA:   3'- gCGGGac--GGCaCGGGCCCac-----CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 30379 0.71 0.190706
Target:  5'- cCGCCCggcgaggacgagcGCCGgcgGCCCGaGUGGCcGCCGc -3'
miRNA:   3'- -GCGGGa------------CGGCa--CGGGCcCACCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 133192 0.71 0.190706
Target:  5'- cCGCCCggcgaggacgagcGCCGgcgGCCCGaGUGGCcGCCGc -3'
miRNA:   3'- -GCGGGa------------CGGCa--CGGGCcCACCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 48613 0.71 0.196563
Target:  5'- gCGCUCgGCCGUGCCgaugugaacgccgCGGcGgcggGGCGCCGc -3'
miRNA:   3'- -GCGGGaCGGCACGG-------------GCC-Ca---CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 34310 0.71 0.19702
Target:  5'- gGCCCUgGCCGgagccGCCCGGGccgaGGUcgGCCGc -3'
miRNA:   3'- gCGGGA-CGGCa----CGGGCCCa---CCG--CGGC- -5'
6424 5' -67.3 NC_001847.1 + 30341 0.71 0.201641
Target:  5'- uGCUCUacgacCCGcUGCCCGGGgaGGCGCUGg -3'
miRNA:   3'- gCGGGAc----GGC-ACGGGCCCa-CCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.