miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 2866 0.66 0.387808
Target:  5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3'
miRNA:   3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 128019 0.66 0.387808
Target:  5'- uGCUCacggGCCaGgaggaGCCCGGccGUGGCGCCu -3'
miRNA:   3'- gCGGGa---CGG-Ca----CGGGCC--CACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 95137 0.66 0.387808
Target:  5'- uCGCCggcGCUGcGCuuGGG-GGUGCCGg -3'
miRNA:   3'- -GCGGga-CGGCaCGggCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 95728 0.66 0.387028
Target:  5'- gCGCCCcccucgcUGCuuuCGgaggaGCCCGGccGGCGCCGg -3'
miRNA:   3'- -GCGGG-------ACG---GCa----CGGGCCcaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 26509 0.66 0.38006
Target:  5'- gGgCCUGCCGgGCgCGGGgccgggGGCGuUCGg -3'
miRNA:   3'- gCgGGACGGCaCGgGCCCa-----CCGC-GGC- -5'
6424 5' -67.3 NC_001847.1 + 130271 0.66 0.38006
Target:  5'- gGCCCUGCCGcUGCCCGc----CGCCc -3'
miRNA:   3'- gCGGGACGGC-ACGGGCccaccGCGGc -5'
6424 5' -67.3 NC_001847.1 + 81166 0.66 0.38006
Target:  5'- gGCCCgccgcGCCGcucggaggGCUCGcGGcGGCGCCa -3'
miRNA:   3'- gCGGGa----CGGCa-------CGGGC-CCaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 27458 0.66 0.38006
Target:  5'- gGCCCUGCCGcUGCCCGc----CGCCc -3'
miRNA:   3'- gCGGGACGGC-ACGGGCccaccGCGGc -5'
6424 5' -67.3 NC_001847.1 + 113399 0.66 0.38006
Target:  5'- gGCCCccCCGcgcGCgCGGGccGGCGCCGg -3'
miRNA:   3'- gCGGGacGGCa--CGgGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 134205 0.66 0.38006
Target:  5'- uCGUCCccggGCgCGgGCUCGGGcuucccGGCGCCGg -3'
miRNA:   3'- -GCGGGa---CG-GCaCGGGCCCa-----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 101160 0.66 0.38006
Target:  5'- gGCCgggGCCGggGCCgGGGUcggGGCGCgGu -3'
miRNA:   3'- gCGGga-CGGCa-CGGgCCCA---CCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 129322 0.66 0.38006
Target:  5'- gGgCCUGCCGgGCgCGGGgccgggGGCGuUCGg -3'
miRNA:   3'- gCgGGACGGCaCGgGCCCa-----CCGC-GGC- -5'
6424 5' -67.3 NC_001847.1 + 132476 0.66 0.38006
Target:  5'- aGCCgaUGCCGgccgaGCcgCCGGGcgaaGGCGCCGc -3'
miRNA:   3'- gCGGg-ACGGCa----CG--GGCCCa---CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 10586 0.66 0.38006
Target:  5'- gGCCCccCCGcgcGCgCGGGccGGCGCCGg -3'
miRNA:   3'- gCGGGacGGCa--CGgGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 52805 0.66 0.38006
Target:  5'- gCGCCCUggcGCCGcGCacacuggaccUCGGGcguuucgcgGGCGCCGg -3'
miRNA:   3'- -GCGGGA---CGGCaCG----------GGCCCa--------CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 130280 0.66 0.38006
Target:  5'- cCGCgUgGCUGUGCCCGucccGGCGCCa -3'
miRNA:   3'- -GCGgGaCGGCACGGGCcca-CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 123463 0.66 0.38006
Target:  5'- gGCCCggcgacgGCCGccgcggGCUCGGcUGGgGCCGc -3'
miRNA:   3'- gCGGGa------CGGCa-----CGGGCCcACCgCGGC- -5'
6424 5' -67.3 NC_001847.1 + 31392 0.66 0.38006
Target:  5'- uCGUCCccggGCgCGgGCUCGGGcuucccGGCGCCGg -3'
miRNA:   3'- -GCGGGa---CG-GCaCGGGCCCa-----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 70220 0.66 0.37699
Target:  5'- cCGCCCcGCCGgcguuggugugacGCgCGGGgcgGGCGgCGg -3'
miRNA:   3'- -GCGGGaCGGCa------------CGgGCCCa--CCGCgGC- -5'
6424 5' -67.3 NC_001847.1 + 77207 0.66 0.373176
Target:  5'- uGCCCgcgacggagccgcggGCCGccggGCCCGGacuUGGCGCgGu -3'
miRNA:   3'- gCGGGa--------------CGGCa---CGGGCCc--ACCGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.