miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 3' -57.1 NC_001847.1 + 133652 0.66 0.846417
Target:  5'- gGCUCUaccCCGAGg-CGCCgCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCgaGCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 132985 0.7 0.641968
Target:  5'- cCGCUCUUccCCGAgcccuggcgcccggcGCUCGCCUUCGaCCc -3'
miRNA:   3'- -GCGAGAAa-GGUU---------------CGAGCGGAGGC-GGc -5'
6426 3' -57.1 NC_001847.1 + 131852 0.73 0.441351
Target:  5'- gCGCUCg--CCGAGCUgcgCGCCgugCuCGCCGg -3'
miRNA:   3'- -GCGAGaaaGGUUCGA---GCGGa--G-GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 130118 0.66 0.854325
Target:  5'- cCGgUCgc-CCGAGCUuccccuccgCGCCgCCGCCGc -3'
miRNA:   3'- -GCgAGaaaGGUUCGA---------GCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 129736 0.69 0.668523
Target:  5'- gCGCUCUcaCUGAGCgcgCgGCCUgugCCGCCGg -3'
miRNA:   3'- -GCGAGAaaGGUUCGa--G-CGGA---GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 129034 0.68 0.748298
Target:  5'- gCGCUCgcgCCGcgccucgcgGGCgucucgCGCCUCCGCg- -3'
miRNA:   3'- -GCGAGaaaGGU---------UCGa-----GCGGAGGCGgc -5'
6426 3' -57.1 NC_001847.1 + 128991 0.67 0.804104
Target:  5'- cCGCgcc-UCCcuGCUCGCUcaCCGCCGg -3'
miRNA:   3'- -GCGagaaAGGuuCGAGCGGa-GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 128620 0.66 0.838314
Target:  5'- gCGCUUcuacgugUUCCAGGCUgagcgCGCCggcgaCGCCGc -3'
miRNA:   3'- -GCGAGa------AAGGUUCGA-----GCGGag---GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 127391 0.66 0.854325
Target:  5'- gGC-Cg--UCGGGCUUGCCcuggCCGCCGc -3'
miRNA:   3'- gCGaGaaaGGUUCGAGCGGa---GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 124376 0.67 0.767406
Target:  5'- cCGCUCUUcCCGcGCgCGCagCUCUGCCa -3'
miRNA:   3'- -GCGAGAAaGGUuCGaGCG--GAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 124217 0.66 0.862032
Target:  5'- cCGCg----CCAgccGGCUCGCCUCgcgguaguaccgCGCCGc -3'
miRNA:   3'- -GCGagaaaGGU---UCGAGCGGAG------------GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 122893 0.67 0.776784
Target:  5'- uGCgUCUgugUCCAuAGCaUCGCCggCGCCGu -3'
miRNA:   3'- gCG-AGAa--AGGU-UCG-AGCGGagGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 118283 0.66 0.838314
Target:  5'- --gUCUcUCCAGgagcccGCUCGCCUCgagCGCCGc -3'
miRNA:   3'- gcgAGAaAGGUU------CGAGCGGAG---GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 117354 0.66 0.854325
Target:  5'- cCGCgg---CCGAGCaaaGCC-CCGCCGa -3'
miRNA:   3'- -GCGagaaaGGUUCGag-CGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 117046 0.7 0.606162
Target:  5'- gGCUCg--CCGaggaGGCggaagccucgcccUCGCCUCCGCCc -3'
miRNA:   3'- gCGAGaaaGGU----UCG-------------AGCGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 116508 0.68 0.738587
Target:  5'- gCGCUCg--CCGAGCa--CCUCUGCCu -3'
miRNA:   3'- -GCGAGaaaGGUUCGagcGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 115325 0.68 0.756951
Target:  5'- uGUUCUUUuucugccgccccgCCAccGCcacCGCCUCCGCCGa -3'
miRNA:   3'- gCGAGAAA-------------GGUu-CGa--GCGGAGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 113456 0.66 0.854325
Target:  5'- gGCUCcucgCCGGGCuccUCGCCauacccgUCGCCGg -3'
miRNA:   3'- gCGAGaaa-GGUUCG---AGCGGa------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 113214 0.66 0.821554
Target:  5'- aGCUCggacUCC-GGCUCGCgCUCggaGCCa -3'
miRNA:   3'- gCGAGaa--AGGuUCGAGCG-GAGg--CGGc -5'
6426 3' -57.1 NC_001847.1 + 112968 0.69 0.668523
Target:  5'- aGCUCUcgcCCGAGCagGCCggcCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCGagCGGa--GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.