miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 89289 0.7 0.793591
Target:  5'- cGCG-CCGCGGcCGAGGCcUCGGCCg- -3'
miRNA:   3'- -CGUaGGCGCCcGUUCUGaAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 87545 0.66 0.943867
Target:  5'- aGUAUUCGCGGGCAucuACcgcCAcuacGCCUCg -3'
miRNA:   3'- -CGUAGGCGCCCGUuc-UGaa-GU----UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 84536 0.71 0.735169
Target:  5'- -gGUUgGCGGGCGGGGCggggCGugcGCCUCg -3'
miRNA:   3'- cgUAGgCGCCCGUUCUGaa--GU---UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 84184 0.7 0.829584
Target:  5'- cGCggCCGCcuuugAGGACUUCAGCCUCg -3'
miRNA:   3'- -CGuaGGCGcccg-UUCUGAAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 82549 0.7 0.784183
Target:  5'- cGCcgcCCGCGGGCucGGCcUCGGCCg- -3'
miRNA:   3'- -CGua-GGCGCCCGuuCUGaAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 81976 0.77 0.412069
Target:  5'- uCAUCaCGCGGGCGgugcucggAGACUUCAGCUUg -3'
miRNA:   3'- cGUAG-GCGCCCGU--------UCUGAAGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 81233 0.67 0.923324
Target:  5'- gGCAgcggCgGCGGGCcAGGCUg-GGCCUg -3'
miRNA:   3'- -CGUa---GgCGCCCGuUCUGAagUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 79562 0.66 0.943867
Target:  5'- gGCucgCgGgGGGCGccGGGCUcgCGGCCUCu -3'
miRNA:   3'- -CGua-GgCgCCCGU--UCUGAa-GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 79063 0.68 0.876982
Target:  5'- cGCAcCC-CGGGCGcgcucagccgcgcAGGCUUCAgcggcGCCUCc -3'
miRNA:   3'- -CGUaGGcGCCCGU-------------UCUGAAGU-----UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 78327 0.67 0.934101
Target:  5'- cGCG-CCGCGGGCccGGCUUgGgcGCCg- -3'
miRNA:   3'- -CGUaGGCGCCCGuuCUGAAgU--UGGag -5'
6442 3' -53.4 NC_001847.1 + 77247 0.68 0.89874
Target:  5'- cGCgGUCgCGCGGGCGcuggcGGGCgaCAcCCUCg -3'
miRNA:   3'- -CG-UAG-GCGCCCGU-----UCUGaaGUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 76594 0.67 0.933586
Target:  5'- cGCcgCCGCuGGCGgcggcgaAGACcgcggCGGCCUCu -3'
miRNA:   3'- -CGuaGGCGcCCGU-------UCUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 76304 0.66 0.956655
Target:  5'- cGCAgcgCCGCGGGCAccgucgUCcACCUa -3'
miRNA:   3'- -CGUa--GGCGCCCGUucuga-AGuUGGAg -5'
6442 3' -53.4 NC_001847.1 + 75783 0.73 0.652326
Target:  5'- aCggCCGCGGGCucGGCgcggcgcgCGACCUCg -3'
miRNA:   3'- cGuaGGCGCCCGuuCUGaa------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 75366 0.66 0.947049
Target:  5'- cGCGUCUcgGCGGGCAugggcacggcaccGGACgcggccagcgagUCGAgCUCg -3'
miRNA:   3'- -CGUAGG--CGCCCGU-------------UCUGa-----------AGUUgGAG- -5'
6442 3' -53.4 NC_001847.1 + 74676 0.67 0.928839
Target:  5'- gGCcgagCCGC-GGCAGGACggCGGCCg- -3'
miRNA:   3'- -CGua--GGCGcCCGUUCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 74165 0.7 0.829584
Target:  5'- gGCG-CCGUGGGCGcgcgcagcggGGACgcCAACCUg -3'
miRNA:   3'- -CGUaGGCGCCCGU----------UCUGaaGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 73858 0.66 0.948375
Target:  5'- cGCcgCCGCGGugcGCGGGGCgcgUCAguuccGCCg- -3'
miRNA:   3'- -CGuaGGCGCC---CGUUCUGa--AGU-----UGGag -5'
6442 3' -53.4 NC_001847.1 + 73375 0.66 0.952636
Target:  5'- -gGUCgGCGGGCAuuGuCUUCGggACCUg -3'
miRNA:   3'- cgUAGgCGCCCGUu-CuGAAGU--UGGAg -5'
6442 3' -53.4 NC_001847.1 + 73273 0.67 0.934101
Target:  5'- uGCAacccCCGCGGGCGcucggcAGGCg-CGGCCUa -3'
miRNA:   3'- -CGUa---GGCGCCCGU------UCUGaaGUUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.