miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 94636 0.67 0.93911
Target:  5'- cGCAgCCGcCGGGCAAuuuUUUCGcagGCCUCc -3'
miRNA:   3'- -CGUaGGC-GCCCGUUcu-GAAGU---UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 73375 0.66 0.952636
Target:  5'- -gGUCgGCGGGCAuuGuCUUCGggACCUg -3'
miRNA:   3'- cgUAGgCGCCCGUu-CuGAAGU--UGGAg -5'
6442 3' -53.4 NC_001847.1 + 13481 0.66 0.952636
Target:  5'- ---gUCGCGGGCuuGGCcUCGGCCaUCa -3'
miRNA:   3'- cguaGGCGCCCGuuCUGaAGUUGG-AG- -5'
6442 3' -53.4 NC_001847.1 + 106672 0.66 0.948375
Target:  5'- gGCGUCCGCGGcGCGucgugccACggCGGCCa- -3'
miRNA:   3'- -CGUAGGCGCC-CGUuc-----UGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 106947 0.66 0.943867
Target:  5'- cGCcgCCGUGGcGCGcAGGCgcgCGGCCg- -3'
miRNA:   3'- -CGuaGGCGCC-CGU-UCUGaa-GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 92031 0.66 0.943867
Target:  5'- cCGUCUGCGGGCAccGCcggcGCCUCc -3'
miRNA:   3'- cGUAGGCGCCCGUucUGaaguUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 48780 0.66 0.943867
Target:  5'- -aAUCCGCGGGCAccGCcgcaaCAGCCg- -3'
miRNA:   3'- cgUAGGCGCCCGUucUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 79562 0.66 0.943867
Target:  5'- gGCucgCgGgGGGCGccGGGCUcgCGGCCUCu -3'
miRNA:   3'- -CGua-GgCgCCCGU--UCUGAa-GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 32983 0.66 0.943867
Target:  5'- gGCG-CCgggGCGGGCAGGGCggccggagCGGCCg- -3'
miRNA:   3'- -CGUaGG---CGCCCGUUCUGaa------GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 36842 0.66 0.952636
Target:  5'- aCAgCCGCGGGCAAGcCcaCGGCUUg -3'
miRNA:   3'- cGUaGGCGCCCGUUCuGaaGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 63833 0.66 0.952636
Target:  5'- aCGUCCGCGGGCcccaaaAAGAagUCAaacGCCg- -3'
miRNA:   3'- cGUAGGCGCCCG------UUCUgaAGU---UGGag -5'
6442 3' -53.4 NC_001847.1 + 68503 0.66 0.952636
Target:  5'- gGCG-CCGC--GCGAGAacUCAACCUCg -3'
miRNA:   3'- -CGUaGGCGccCGUUCUgaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 123522 0.66 0.956655
Target:  5'- gGCugCCGCGGGCucGGCUaaGGCCa- -3'
miRNA:   3'- -CGuaGGCGCCCGuuCUGAagUUGGag -5'
6442 3' -53.4 NC_001847.1 + 16312 0.66 0.956655
Target:  5'- uCAcCCGCGGcGCGGGugUaggCAAgCUCa -3'
miRNA:   3'- cGUaGGCGCC-CGUUCugAa--GUUgGAG- -5'
6442 3' -53.4 NC_001847.1 + 119572 0.66 0.956655
Target:  5'- --cUCUGCGGGCAGcGGCggccgCGGCC-Cg -3'
miRNA:   3'- cguAGGCGCCCGUU-CUGaa---GUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 98375 0.66 0.956655
Target:  5'- cGCGU-CGCGGGCGc-GCU-CGAUCUCc -3'
miRNA:   3'- -CGUAgGCGCCCGUucUGAaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 3980 0.66 0.956655
Target:  5'- gGCG-CCGgGGGCcGGGCgcgCGGCCcCg -3'
miRNA:   3'- -CGUaGGCgCCCGuUCUGaa-GUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 99848 0.66 0.956264
Target:  5'- cGCG-CCGCucGGCGGGGCUgcgCAguacguuACCUCu -3'
miRNA:   3'- -CGUaGGCGc-CCGUUCUGAa--GU-------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 70693 0.66 0.952636
Target:  5'- cGCcgCCGCGGGCGGcGGCgggggCGcCCg- -3'
miRNA:   3'- -CGuaGGCGCCCGUU-CUGaa---GUuGGag -5'
6442 3' -53.4 NC_001847.1 + 68937 0.66 0.952636
Target:  5'- gGCggCCGCGGGCugcGcCUcCAGCCa- -3'
miRNA:   3'- -CGuaGGCGCCCGuu-CuGAaGUUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.