Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6445 | 3' | -56.3 | NC_001847.1 | + | 416 | 0.74 | 0.469056 |
Target: 5'- ---cGAGGGcccggGGCggGCGGGCGGCGGCGg -3' miRNA: 3'- acauCUCCCa----CUG--CGCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 528 | 0.68 | 0.75898 |
Target: 5'- --cGGAGGGcaagugcccGACGCGGGgaacgUGGCGGCGg -3' miRNA: 3'- acaUCUCCCa--------CUGCGCUU-----GCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 3521 | 0.66 | 0.863206 |
Target: 5'- gUGUAcGGGccGUGGCcgacuacggccGCGAgcGCGGCGGCGg -3' miRNA: 3'- -ACAUcUCC--CACUG-----------CGCU--UGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 3893 | 0.7 | 0.660136 |
Target: 5'- --cGGAGcgagccguugcgcgcGGUGGCGCGGACgcacgcacagcgcuGGCAGCGg -3' miRNA: 3'- acaUCUC---------------CCACUGCGCUUG--------------CCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 3949 | 0.69 | 0.699822 |
Target: 5'- cGgcGGGGGgGGCGCcgucucCGGCGGCGa -3' miRNA: 3'- aCauCUCCCaCUGCGcuu---GCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 4864 | 0.71 | 0.63859 |
Target: 5'- --gGGAGGGgggGGgGCGGcgGGCAGCGg -3' miRNA: 3'- acaUCUCCCa--CUgCGCUugCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 5026 | 0.69 | 0.719869 |
Target: 5'- --cGGAGGG-GAagcucggGCGAcCGGCGGCGg -3' miRNA: 3'- acaUCUCCCaCUg------CGCUuGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 5140 | 0.69 | 0.709879 |
Target: 5'- uUGUAGAagaagcagGGGUG-UGCGGGCcaggcaucGGCGGCGa -3' miRNA: 3'- -ACAUCU--------CCCACuGCGCUUG--------CCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 5528 | 0.66 | 0.863206 |
Target: 5'- -cUAGGGcGGcGACGCucguGACGGCGGCc -3' miRNA: 3'- acAUCUC-CCaCUGCGc---UUGCCGUCGc -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 6145 | 0.66 | 0.870699 |
Target: 5'- --cGGGGGGcucgGugGCGGugACGGCGcGCa -3' miRNA: 3'- acaUCUCCCa---CugCGCU--UGCCGU-CGc -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 6947 | 0.7 | 0.689708 |
Target: 5'- --aAGAcGGGccaGGCGCGGggucGCGGCGGCGc -3' miRNA: 3'- acaUCU-CCCa--CUGCGCU----UGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 7390 | 0.79 | 0.222695 |
Target: 5'- aGUGGAGGacGUGGCGCGcuCGGCAGaCGg -3' miRNA: 3'- aCAUCUCC--CACUGCGCuuGCCGUC-GC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 7728 | 0.7 | 0.659111 |
Target: 5'- aGgcGcAGGGcgcgGGCGCGGA-GGCGGCGg -3' miRNA: 3'- aCauC-UCCCa---CUGCGCUUgCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 10158 | 0.67 | 0.847597 |
Target: 5'- --gGGAGGGcuuuuucGACGCGcGCGGCuuaAGCa -3' miRNA: 3'- acaUCUCCCa------CUGCGCuUGCCG---UCGc -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 10273 | 0.74 | 0.459718 |
Target: 5'- ---cGAGuGcGACGUGAGCGGCAGCGa -3' miRNA: 3'- acauCUCcCaCUGCGCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 10338 | 0.74 | 0.459718 |
Target: 5'- --aGGAGGGgGAgGaGAACGGCGGCGa -3' miRNA: 3'- acaUCUCCCaCUgCgCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 11328 | 0.66 | 0.891864 |
Target: 5'- cGgcGGGcGGcUGGCGCcgGAGCGGgAGCa -3' miRNA: 3'- aCauCUC-CC-ACUGCG--CUUGCCgUCGc -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 13816 | 0.66 | 0.891864 |
Target: 5'- gUGUAcGGGGGccGGCGUGuGACGGUGcGCGa -3' miRNA: 3'- -ACAU-CUCCCa-CUGCGC-UUGCCGU-CGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 15557 | 0.7 | 0.645778 |
Target: 5'- -----cGGGUGGCGCGGgggaacccccaucgGCGGCAGgCGg -3' miRNA: 3'- acaucuCCCACUGCGCU--------------UGCCGUC-GC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 15745 | 0.71 | 0.628318 |
Target: 5'- -cUGGAGGGcgccuaugccGACGCGGGCGGCccgcuuucgccGGCGg -3' miRNA: 3'- acAUCUCCCa---------CUGCGCUUGCCG-----------UCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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