miRNA display CGI


Results 1 - 20 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 84754 0.66 0.423382
Target:  5'- aCCGCaGCacgagcauGGCCaCGGCCaG-CAGGGCg -3'
miRNA:   3'- -GGCGcCG--------CCGGgGCCGG-CaGUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 44289 0.66 0.415304
Target:  5'- aCCgGCGGCGcGgCgCGGCgCGgc-GGGCCa -3'
miRNA:   3'- -GG-CGCCGC-CgGgGCCG-GCaguCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 16826 0.66 0.415304
Target:  5'- uCCGgauCGGUGGCgCgGGCa-UCGGGGCg -3'
miRNA:   3'- -GGC---GCCGCCGgGgCCGgcAGUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 131334 0.66 0.415304
Target:  5'- cUCGCGGCcgacGCCCCGuGCCGgcac-GCCg -3'
miRNA:   3'- -GGCGCCGc---CGGGGC-CGGCaguccCGG- -5'
6455 3' -67.8 NC_001847.1 + 116211 0.66 0.415304
Target:  5'- gCCGCGGCGGCgCUGGaaGaCAccuGCCa -3'
miRNA:   3'- -GGCGCCGCCGgGGCCggCaGUcc-CGG- -5'
6455 3' -67.8 NC_001847.1 + 101358 0.66 0.415304
Target:  5'- gCCGCGcGCaGCCCCGcgaaGCCcugCAGcGGCa -3'
miRNA:   3'- -GGCGC-CGcCGGGGC----CGGca-GUC-CCGg -5'
6455 3' -67.8 NC_001847.1 + 65483 0.66 0.415304
Target:  5'- cUCGCucuGGCGGUCCaUGGCgCGgugUGGGGCg -3'
miRNA:   3'- -GGCG---CCGCCGGG-GCCG-GCa--GUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 49824 0.66 0.415304
Target:  5'- gCGCuGGCGGCCUgGacGCUG-CAGGcgGCCg -3'
miRNA:   3'- gGCG-CCGCCGGGgC--CGGCaGUCC--CGG- -5'
6455 3' -67.8 NC_001847.1 + 92487 0.66 0.415304
Target:  5'- gCgGCGGCGGCCUCuucgacaaagGGCacgaCGUCGGcGCUg -3'
miRNA:   3'- -GgCGCCGCCGGGG----------CCG----GCAGUCcCGG- -5'
6455 3' -67.8 NC_001847.1 + 46339 0.66 0.415304
Target:  5'- cCCGCGG-GGCCgcgUCGGCgGcaUCGGGGg- -3'
miRNA:   3'- -GGCGCCgCCGG---GGCCGgC--AGUCCCgg -5'
6455 3' -67.8 NC_001847.1 + 126224 0.66 0.415304
Target:  5'- aCGCggaGGCGGCCCCcuGGCgGUUGGaaaGCUg -3'
miRNA:   3'- gGCG---CCGCCGGGG--CCGgCAGUCc--CGG- -5'
6455 3' -67.8 NC_001847.1 + 129263 0.66 0.42257
Target:  5'- gCGCGGCcGCCCUGcgcgcagcGCUGgaccaccUCgAGGGCCa -3'
miRNA:   3'- gGCGCCGcCGGGGC--------CGGC-------AG-UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 113169 0.66 0.423382
Target:  5'- aCCGCgGGCGGCaaCCGGC-GcCGcGGCCc -3'
miRNA:   3'- -GGCG-CCGCCGg-GGCCGgCaGUcCCGG- -5'
6455 3' -67.8 NC_001847.1 + 80549 0.66 0.423382
Target:  5'- gCGCgGGCGcGCgCCGccagcGCCGcccagcccgCGGGGCCg -3'
miRNA:   3'- gGCG-CCGC-CGgGGC-----CGGCa--------GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 64853 0.66 0.423382
Target:  5'- gCGCGGCGcGCCgCGacCCGcCAGGcGCg -3'
miRNA:   3'- gGCGCCGC-CGGgGCc-GGCaGUCC-CGg -5'
6455 3' -67.8 NC_001847.1 + 28906 0.66 0.423382
Target:  5'- aCGUGGCGGCCUgcgUGGCCaUgAGccGCCg -3'
miRNA:   3'- gGCGCCGCCGGG---GCCGGcAgUCc-CGG- -5'
6455 3' -67.8 NC_001847.1 + 33847 0.66 0.423382
Target:  5'- gUCGCGGCGGgagagaCCgCgGGCUGg-GGGGCg -3'
miRNA:   3'- -GGCGCCGCC------GG-GgCCGGCagUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 27107 0.66 0.423382
Target:  5'- gCCGC-GCGcGCCCCgccGGCCGcCGcGGCg -3'
miRNA:   3'- -GGCGcCGC-CGGGG---CCGGCaGUcCCGg -5'
6455 3' -67.8 NC_001847.1 + 4218 0.66 0.423382
Target:  5'- gUCGcCGGCcucGGUCCUGGCCccgAGGGCa -3'
miRNA:   3'- -GGC-GCCG---CCGGGGCCGGcagUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 1092 0.66 0.423382
Target:  5'- gCCG-GGC-GCCgCGGCCG-CGGGcggcGCCg -3'
miRNA:   3'- -GGCgCCGcCGGgGCCGGCaGUCC----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.