miRNA display CGI


Results 1 - 20 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 11663 0.87 0.013858
Target:  5'- uUGCGGCGGCCCCagccgagcccgcggcGGCCGUCGccGGGCCa -3'
miRNA:   3'- gGCGCCGCCGGGG---------------CCGGCAGU--CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 62448 0.79 0.056121
Target:  5'- aCCG-GGCGGCcgcucucCCCGGCCucagCAGGGCCg -3'
miRNA:   3'- -GGCgCCGCCG-------GGGCCGGca--GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 66244 0.78 0.062133
Target:  5'- gCGCGGCGGCgCUCGGCaugCuGGGCCg -3'
miRNA:   3'- gGCGCCGCCG-GGGCCGgcaGuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 84754 0.66 0.423382
Target:  5'- aCCGCaGCacgagcauGGCCaCGGCCaG-CAGGGCg -3'
miRNA:   3'- -GGCGcCG--------CCGGgGCCGG-CaGUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 11581 0.85 0.018793
Target:  5'- cUCGCGGCGGCCCCGGCCcaagccccguucgCAGcGGCCu -3'
miRNA:   3'- -GGCGCCGCCGGGGCCGGca-----------GUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 6683 0.85 0.020073
Target:  5'- gCCGCGGCGGCCggCCGGgCGcgcgcgCAGGGCCg -3'
miRNA:   3'- -GGCGCCGCCGG--GGCCgGCa-----GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 111288 0.81 0.03966
Target:  5'- gCCgGgGGCGGCgCUCGGCCGggggCGGGGCCc -3'
miRNA:   3'- -GG-CgCCGCCG-GGGCCGGCa---GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 132709 0.8 0.040667
Target:  5'- -gGCGGCGGCCcugCCGGCCGcCgcgGGGGCCc -3'
miRNA:   3'- ggCGCCGCCGG---GGCCGGCaG---UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 105769 0.8 0.047254
Target:  5'- gCGCGGCGGCCgCCucggcggcaGcGCCGcCGGGGCCg -3'
miRNA:   3'- gGCGCCGCCGG-GG---------C-CGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 129464 0.79 0.055427
Target:  5'- uCUG-GGCGGCCCCGGCCGgccCAccuucgcgccugggcGGGCCu -3'
miRNA:   3'- -GGCgCCGCCGGGGCCGGCa--GU---------------CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 37571 0.79 0.050928
Target:  5'- aCGCGGCGGCgCUGGCCGcugcggcugCGGcGGCCg -3'
miRNA:   3'- gGCGCCGCCGgGGCCGGCa--------GUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 100835 0.8 0.04495
Target:  5'- cCCG-GGCGGCUCCGGCC---AGGGCCg -3'
miRNA:   3'- -GGCgCCGCCGGGGCCGGcagUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 134258 0.86 0.014805
Target:  5'- gCCGCGGCGGCCCCGGCg--C-GGGCCg -3'
miRNA:   3'- -GGCGCCGCCGGGGCCGgcaGuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 73708 0.79 0.052213
Target:  5'- gCCGCGcccggcggcGCGGCCgCGGgCGUCgAGGGCCg -3'
miRNA:   3'- -GGCGC---------CGCCGGgGCCgGCAG-UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 16636 0.86 0.015977
Target:  5'- gCGCGGCGGCUuuG-CCGUCGGGGCCc -3'
miRNA:   3'- gGCGCCGCCGGggCcGGCAGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 103776 0.8 0.04384
Target:  5'- aCUGCGcCGGCaCCCGGCCGgCGGGGCUu -3'
miRNA:   3'- -GGCGCcGCCG-GGGCCGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 120986 0.79 0.054878
Target:  5'- gCGCGGCcGCCCCGGCCGccgcugcgCAGccGGCCg -3'
miRNA:   3'- gGCGCCGcCGGGGCCGGCa-------GUC--CCGG- -5'
6455 3' -67.8 NC_001847.1 + 14289 0.78 0.060611
Target:  5'- gCCGCGGCgaaauGGCguggCCGGCCGccucUCGGGGCCu -3'
miRNA:   3'- -GGCGCCG-----CCGg---GGCCGGC----AGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 102950 0.85 0.01724
Target:  5'- cCCGCGGgccucgGGCCCCGGCCGg-GGGGCCg -3'
miRNA:   3'- -GGCGCCg-----CCGGGGCCGGCagUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 15127 0.81 0.035871
Target:  5'- aCgGCGGCGGUgCUGGCCuugcuacugcgcGUCGGGGCCg -3'
miRNA:   3'- -GgCGCCGCCGgGGCCGG------------CAGUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.