miRNA display CGI


Results 1 - 20 of 841 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 72 0.77 0.077587
Target:  5'- gCGCGGCGGgCCCGGgcCCGcUCuGGGCUc -3'
miRNA:   3'- gGCGCCGCCgGGGCC--GGC-AGuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 137 0.85 0.01724
Target:  5'- cCCGCGGgccucgGGCCCCGGCCGg-GGGGCCg -3'
miRNA:   3'- -GGCGCCg-----CCGGGGCCGGCagUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 276 0.66 0.376373
Target:  5'- gCC-CGGgGGCCgCCGaGCCcgcgCGGGcGCCg -3'
miRNA:   3'- -GGcGCCgCCGG-GGC-CGGca--GUCC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 472 0.68 0.312748
Target:  5'- gCgGCGGCGGCagcagCGGCgGcggCGGGGCg -3'
miRNA:   3'- -GgCGCCGCCGgg---GCCGgCa--GUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 775 0.7 0.243246
Target:  5'- gCCGcCGGCGGCgCCGGCCucGUCgucguccgacgaggcGGGGg- -3'
miRNA:   3'- -GGC-GCCGCCGgGGCCGG--CAG---------------UCCCgg -5'
6455 3' -67.8 NC_001847.1 + 877 0.76 0.081491
Target:  5'- gCGCGGCGGCggCCCGcGCCG---GGGCCg -3'
miRNA:   3'- gGCGCCGCCG--GGGC-CGGCaguCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 901 0.71 0.187945
Target:  5'- nCGCcGCGGCCgCCGGCCGcCGcccgccGGcGCCg -3'
miRNA:   3'- gGCGcCGCCGG-GGCCGGCaGU------CC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 963 0.74 0.111799
Target:  5'- aCUGCGcCGGCaCCCgGGCCGgCGGGGCUu -3'
miRNA:   3'- -GGCGCcGCCG-GGG-CCGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 995 0.67 0.354225
Target:  5'- gCCGCGGCGGCggcacgcgcuCCaccaGGCCGccgcccgCGGcGcGCCg -3'
miRNA:   3'- -GGCGCCGCCG----------GGg---CCGGCa------GUC-C-CGG- -5'
6455 3' -67.8 NC_001847.1 + 1063 0.66 0.415305
Target:  5'- -aGCGGCGGCgCCgGGCUGUUc--GCUg -3'
miRNA:   3'- ggCGCCGCCG-GGgCCGGCAGuccCGG- -5'
6455 3' -67.8 NC_001847.1 + 1092 0.66 0.423382
Target:  5'- gCCG-GGC-GCCgCGGCCG-CGGGcggcGCCg -3'
miRNA:   3'- -GGCgCCGcCGGgGCCGGCaGUCC----CGG- -5'
6455 3' -67.8 NC_001847.1 + 1150 0.7 0.230575
Target:  5'- uCgGCGcGCGGCUCCGGCag-CGcGGCCg -3'
miRNA:   3'- -GgCGC-CGCCGGGGCCGgcaGUcCCGG- -5'
6455 3' -67.8 NC_001847.1 + 1189 0.7 0.230575
Target:  5'- aCCGCcGCGGCCggCaGCuCGUCGGGcGCCa -3'
miRNA:   3'- -GGCGcCGCCGGg-GcCG-GCAGUCC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 1236 0.68 0.287204
Target:  5'- cCCGCaGGCcaGGUacaCCGGCCG-CAGcGGCg -3'
miRNA:   3'- -GGCG-CCG--CCGg--GGCCGGCaGUC-CCGg -5'
6455 3' -67.8 NC_001847.1 + 1410 0.67 0.333013
Target:  5'- gCGCGGCGGCaCgGGCaccgCGgugCGcGGGCCc -3'
miRNA:   3'- gGCGCCGCCGgGgCCG----GCa--GU-CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 1514 0.73 0.135406
Target:  5'- gCCGCgcguaGGCGGCCUCGGCgCGcgCGaaggcgcccGGGCCg -3'
miRNA:   3'- -GGCG-----CCGCCGGGGCCG-GCa-GU---------CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 1636 0.69 0.248694
Target:  5'- aCCGCGGCGcgcagguacacgugcGCCugcccgacggCCgGGCCGUCGcGcGGCCa -3'
miRNA:   3'- -GGCGCCGC---------------CGG----------GG-CCGGCAGU-C-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 1932 0.72 0.167383
Target:  5'- gCGCGGCGGCCaCUcgGGCCGcCGGcGCUc -3'
miRNA:   3'- gGCGCCGCCGG-GG--CCGGCaGUCcCGG- -5'
6455 3' -67.8 NC_001847.1 + 2018 0.69 0.246503
Target:  5'- gCCGCaGGUuuuccagcacGGCgCCGGCCGUggccacgaUAGGGUCu -3'
miRNA:   3'- -GGCG-CCG----------CCGgGGCCGGCA--------GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2103 0.74 0.123078
Target:  5'- gCGCGGCGGCgggccgcgauCUCGGCCagcgccUCGGGGUCg -3'
miRNA:   3'- gGCGCCGCCG----------GGGCCGGc-----AGUCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.