miRNA display CGI

Results 1 - 20 of 841 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6455	3'	-67.8	NC_001847.1	+	50918	1.11	0.000208
	Target:  5'- cCCGCGGCGGCCCCGGCCGUCAGGGCCu -3' miRNA:   3'- -GGCGCCGCCGGGGCCGGCAGUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	11663	0.87	0.013858
	Target:  5'- uUGCGGCGGCCCCagccgagcccgcggcGGCCGUCGccGGGCCa -3' miRNA:   3'- gGCGCCGCCGGGG---------------CCGGCAGU--CCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	134258	0.86	0.014805
	Target:  5'- gCCGCGGCGGCCCCGGCg--C-GGGCCg -3' miRNA:   3'- -GGCGCCGCCGGGGCCGgcaGuCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	31445	0.86	0.014805
	Target:  5'- gCCGCGGCGGCCCCGGCg--C-GGGCCg -3' miRNA:   3'- -GGCGCCGCCGGGGCCGgcaGuCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	16636	0.86	0.015977
	Target:  5'- gCGCGGCGGCUuuG-CCGUCGGGGCCc -3' miRNA:   3'- gGCGCCGCCGGggCcGGCAGUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	137	0.85	0.01724
	Target:  5'- cCCGCGGgccucgGGCCCCGGCCGg-GGGGCCg -3' miRNA:   3'- -GGCGCCg-----CCGGGGCCGGCagUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	102950	0.85	0.01724
	Target:  5'- cCCGCGGgccucgGGCCCCGGCCGg-GGGGCCg -3' miRNA:   3'- -GGCGCCg-----CCGGGGCCGGCagUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	11581	0.85	0.018793
	Target:  5'- cUCGCGGCGGCCCCGGCCcaagccccguucgCAGcGGCCu -3' miRNA:   3'- -GGCGCCGCCGGGGCCGGca-----------GUC-CCGG- -5'
6455	3'	-67.8	NC_001847.1	+	6683	0.85	0.020073
	Target:  5'- gCCGCGGCGGCCggCCGGgCGcgcgcgCAGGGCCg -3' miRNA:   3'- -GGCGCCGCCGG--GGCCgGCa-----GUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	82462	0.84	0.021657
	Target:  5'- gCGCGGCGGgCCCGGCCccggccaCGGGGCCg -3' miRNA:   3'- gGCGCCGCCgGGGCCGGca-----GUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	34080	0.83	0.026512
	Target:  5'- cCCGCGGCGGCCCCggGGCCGgccucggCGGGuGCg -3' miRNA:   3'- -GGCGCCGCCGGGG--CCGGCa------GUCC-CGg -5'
6455	3'	-67.8	NC_001847.1	+	115775	0.82	0.029328
	Target:  5'- -gGCGGCGGCCCUGGCCaccGUCGGGcGCg -3' miRNA:   3'- ggCGCCGCCGGGGCCGG---CAGUCC-CGg -5'
6455	3'	-67.8	NC_001847.1	+	66681	0.82	0.030844
	Target:  5'- gCGCGGCggGGCCCCGGCCG-CGGGcGCg -3' miRNA:   3'- gGCGCCG--CCGGGGCCGGCaGUCC-CGg -5'
6455	3'	-67.8	NC_001847.1	+	62725	0.81	0.03498
	Target:  5'- uCCGCGuuGCGGCCgUGGCCGUCcccgcgucGGGGCCc -3' miRNA:   3'- -GGCGC--CGCCGGgGCCGGCAG--------UCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	15127	0.81	0.035871
	Target:  5'- aCgGCGGCGGUgCUGGCCuugcuacugcgcGUCGGGGCCg -3' miRNA:   3'- -GgCGCCGCCGgGGCCGG------------CAGUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	111288	0.81	0.03966
	Target:  5'- gCCgGgGGCGGCgCUCGGCCGggggCGGGGCCc -3' miRNA:   3'- -GG-CgCCGCCG-GGGCCGGCa---GUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	8475	0.81	0.03966
	Target:  5'- gCCgGgGGCGGCgCUCGGCCGggggCGGGGCCc -3' miRNA:   3'- -GG-CgCCGCCG-GGGCCGGCa---GUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	132709	0.8	0.040667
	Target:  5'- -gGCGGCGGCCcugCCGGCCGcCgcgGGGGCCc -3' miRNA:   3'- ggCGCCGCCGG---GGCCGGCaG---UCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	103776	0.8	0.04384
	Target:  5'- aCUGCGcCGGCaCCCGGCCGgCGGGGCUu -3' miRNA:   3'- -GGCGCcGCCG-GGGCCGGCaGUCCCGG- -5'
6455	3'	-67.8	NC_001847.1	+	29896	0.8	0.04495
	Target:  5'- -gGCGGCGGCCcugCCGGCCGcCgcggGGGGCCc -3' miRNA:   3'- ggCGCCGCCGG---GGCCGGCaG----UCCCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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