miRNA display CGI


Results 21 - 40 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 29896 0.8 0.04495
Target:  5'- -gGCGGCGGCCcugCCGGCCGcCgcggGGGGCCc -3'
miRNA:   3'- ggCGCCGCCGG---GGCCGGCaG----UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 105769 0.8 0.047254
Target:  5'- gCGCGGCGGCCgCCucggcggcaGcGCCGcCGGGGCCg -3'
miRNA:   3'- gGCGCCGCCGG-GG---------C-CGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 18982 0.79 0.048328
Target:  5'- gCCGCGGC-GCCCgCGGCCGcCAgcgccucGGGCCg -3'
miRNA:   3'- -GGCGCCGcCGGG-GCCGGCaGU-------CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 2956 0.79 0.048449
Target:  5'- gCGCGGCGGCCgCCucggcgcgcaGcGCCGcCGGGGCCg -3'
miRNA:   3'- gGCGCCGCCGG-GG----------C-CGGCaGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 37571 0.79 0.050928
Target:  5'- aCGCGGCGGCgCUGGCCGcugcggcugCGGcGGCCg -3'
miRNA:   3'- gGCGCCGCCGgGGCCGGCa--------GUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 104541 0.79 0.050928
Target:  5'- gCGCGGCGGCCCCggGGCCGcuacgCGGcGGUCc -3'
miRNA:   3'- gGCGCCGCCGGGG--CCGGCa----GUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 73708 0.79 0.052213
Target:  5'- gCCGCGcccggcggcGCGGCCgCGGgCGUCgAGGGCCg -3'
miRNA:   3'- -GGCGC---------CGCCGGgGCCgGCAG-UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 119526 0.79 0.05353
Target:  5'- -gGCGGCGGCCgCGGCCGgcaggCuGGGCa -3'
miRNA:   3'- ggCGCCGCCGGgGCCGGCa----GuCCCGg -5'
6455 3' -67.8 NC_001847.1 + 79523 0.79 0.05353
Target:  5'- -gGCuGGCGGCgUCGucGCCGUCGGGGCCg -3'
miRNA:   3'- ggCG-CCGCCGgGGC--CGGCAGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 120986 0.79 0.054878
Target:  5'- gCGCGGCcGCCCCGGCCGccgcugcgCAGccGGCCg -3'
miRNA:   3'- gGCGCCGcCGGGGCCGGCa-------GUC--CCGG- -5'
6455 3' -67.8 NC_001847.1 + 129464 0.79 0.055427
Target:  5'- uCUG-GGCGGCCCCGGCCGgccCAccuucgcgccugggcGGGCCu -3'
miRNA:   3'- -GGCgCCGCCGGGGCCGGCa--GU---------------CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 26651 0.79 0.055427
Target:  5'- uCUG-GGCGGCCCCGGCCGgccCAccuucgcgccugggcGGGCCu -3'
miRNA:   3'- -GGCgCCGCCGGGGCCGGCa--GU---------------CCCGG- -5'
6455 3' -67.8 NC_001847.1 + 62448 0.79 0.056121
Target:  5'- aCCG-GGCGGCcgcucucCCCGGCCucagCAGGGCCg -3'
miRNA:   3'- -GGCgCCGCCG-------GGGCCGGca--GUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 14289 0.78 0.060611
Target:  5'- gCCGCGGCgaaauGGCguggCCGGCCGccucUCGGGGCCu -3'
miRNA:   3'- -GGCGCCG-----CCGg---GGCCGGC----AGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 66244 0.78 0.062133
Target:  5'- gCGCGGCGGCgCUCGGCaugCuGGGCCg -3'
miRNA:   3'- gGCGCCGCCG-GGGCCGgcaGuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 12372 0.78 0.063691
Target:  5'- gCGuCGGCGGCUgCGGCC-UCGGGGCg -3'
miRNA:   3'- gGC-GCCGCCGGgGCCGGcAGUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 11361 0.78 0.066756
Target:  5'- gCCGC-GCaGGCCCCgaGGCCaaugcaaGUCAGGGCCg -3'
miRNA:   3'- -GGCGcCG-CCGGGG--CCGG-------CAGUCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 52665 0.77 0.068595
Target:  5'- aCGCcuucGGCGGCCCCguGGCCGgggCcGGGCCc -3'
miRNA:   3'- gGCG----CCGCCGGGG--CCGGCa--GuCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 16054 0.77 0.072065
Target:  5'- cCCGCGGCGGCCgCGGCgCcUCugcuGGGCg -3'
miRNA:   3'- -GGCGCCGCCGGgGCCG-GcAGu---CCCGg -5'
6455 3' -67.8 NC_001847.1 + 76361 0.77 0.072065
Target:  5'- gCCGgGGCGGaCCCCGGUCGccucuUCAcGGCCu -3'
miRNA:   3'- -GGCgCCGCC-GGGGCCGGC-----AGUcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.