miRNA display CGI


Results 21 - 40 of 841 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6455 3' -67.8 NC_001847.1 + 47560 0.66 0.415305
Target:  5'- gCGCGGgGaGCCCggCGGCCGcgCAcGcGCCg -3'
miRNA:   3'- gGCGCCgC-CGGG--GCCGGCa-GUcC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 1063 0.66 0.415305
Target:  5'- -aGCGGCGGCgCCgGGCUGUUc--GCUg -3'
miRNA:   3'- ggCGCCGCCG-GGgCCGGCAGuccCGG- -5'
6455 3' -67.8 NC_001847.1 + 72906 0.66 0.415305
Target:  5'- -gGUGGCGcGCCacgaGGCgGUCGGcGGCg -3'
miRNA:   3'- ggCGCCGC-CGGgg--CCGgCAGUC-CCGg -5'
6455 3' -67.8 NC_001847.1 + 82599 0.66 0.415305
Target:  5'- cUCGCGGCGGCgCCUGugcGCCGcgcgCuGGaGCUu -3'
miRNA:   3'- -GGCGCCGCCG-GGGC---CGGCa---GuCC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 4417 0.66 0.415305
Target:  5'- gCCGaCGGCGGCgagCgCGcGCCG-CAGGGaaaCg -3'
miRNA:   3'- -GGC-GCCGCCG---GgGC-CGGCaGUCCCg--G- -5'
6455 3' -67.8 NC_001847.1 + 46339 0.66 0.415304
Target:  5'- cCCGCGG-GGCCgcgUCGGCgGcaUCGGGGg- -3'
miRNA:   3'- -GGCGCCgCCGG---GGCCGgC--AGUCCCgg -5'
6455 3' -67.8 NC_001847.1 + 44289 0.66 0.415304
Target:  5'- aCCgGCGGCGcGgCgCGGCgCGgc-GGGCCa -3'
miRNA:   3'- -GG-CGCCGC-CgGgGCCG-GCaguCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 16826 0.66 0.415304
Target:  5'- uCCGgauCGGUGGCgCgGGCa-UCGGGGCg -3'
miRNA:   3'- -GGC---GCCGCCGgGgCCGgcAGUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 131334 0.66 0.415304
Target:  5'- cUCGCGGCcgacGCCCCGuGCCGgcac-GCCg -3'
miRNA:   3'- -GGCGCCGc---CGGGGC-CGGCaguccCGG- -5'
6455 3' -67.8 NC_001847.1 + 126224 0.66 0.415304
Target:  5'- aCGCggaGGCGGCCCCcuGGCgGUUGGaaaGCUg -3'
miRNA:   3'- gGCG---CCGCCGGGG--CCGgCAGUCc--CGG- -5'
6455 3' -67.8 NC_001847.1 + 116211 0.66 0.415304
Target:  5'- gCCGCGGCGGCgCUGGaaGaCAccuGCCa -3'
miRNA:   3'- -GGCGCCGCCGgGGCCggCaGUcc-CGG- -5'
6455 3' -67.8 NC_001847.1 + 101358 0.66 0.415304
Target:  5'- gCCGCGcGCaGCCCCGcgaaGCCcugCAGcGGCa -3'
miRNA:   3'- -GGCGC-CGcCGGGGC----CGGca-GUC-CCGg -5'
6455 3' -67.8 NC_001847.1 + 92487 0.66 0.415304
Target:  5'- gCgGCGGCGGCCUCuucgacaaagGGCacgaCGUCGGcGCUg -3'
miRNA:   3'- -GgCGCCGCCGGGG----------CCG----GCAGUCcCGG- -5'
6455 3' -67.8 NC_001847.1 + 49824 0.66 0.415304
Target:  5'- gCGCuGGCGGCCUgGacGCUG-CAGGcgGCCg -3'
miRNA:   3'- gGCG-CCGCCGGGgC--CGGCaGUCC--CGG- -5'
6455 3' -67.8 NC_001847.1 + 65483 0.66 0.415304
Target:  5'- cUCGCucuGGCGGUCCaUGGCgCGgugUGGGGCg -3'
miRNA:   3'- -GGCG---CCGCCGGG-GCCG-GCa--GUCCCGg -5'
6455 3' -67.8 NC_001847.1 + 75447 0.66 0.4137
Target:  5'- gCGCGGUGuuCCCGcuGCCGaccgggggggaGGGGCCa -3'
miRNA:   3'- gGCGCCGCcgGGGC--CGGCag---------UCCCGG- -5'
6455 3' -67.8 NC_001847.1 + 35624 0.66 0.4137
Target:  5'- gCCGcCGGCGGCgCUGGggccagcgcuggaCCGcgccgccUCGGcGGCCg -3'
miRNA:   3'- -GGC-GCCGCCGgGGCC-------------GGC-------AGUC-CCGG- -5'
6455 3' -67.8 NC_001847.1 + 10844 0.66 0.410503
Target:  5'- gCGaCGGCGGCgCgUGGCCGaggcgcggcgggcgCGGGcGCCc -3'
miRNA:   3'- gGC-GCCGCCG-GgGCCGGCa-------------GUCC-CGG- -5'
6455 3' -67.8 NC_001847.1 + 14094 0.66 0.410503
Target:  5'- aUCGCGGaGGCgCUGGCggaccacccgcaccuCGUCAcGGGCg -3'
miRNA:   3'- -GGCGCCgCCGgGGCCG---------------GCAGU-CCCGg -5'
6455 3' -67.8 NC_001847.1 + 46911 0.66 0.407322
Target:  5'- gCCGCGcCGGCCUCGGCUccggCgAGGcGCUu -3'
miRNA:   3'- -GGCGCcGCCGGGGCCGGca--G-UCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.