miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6473 3' -48.6 NC_001847.1 + 16372 0.66 0.999324
Target:  5'- cCGGUGccgcucACACCGCGcgccACAAcCGCGa -3'
miRNA:   3'- -GCCACauaua-UGUGGCGC----UGUU-GUGC- -5'
6473 3' -48.6 NC_001847.1 + 114633 0.66 0.999324
Target:  5'- -aGUGggcccccGC-CCGCGACGACGCGc -3'
miRNA:   3'- gcCACauaua--UGuGGCGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 58273 0.66 0.999324
Target:  5'- aGGccuccAUGUGCucgGCCGCGGCGACGgCGg -3'
miRNA:   3'- gCCaca--UAUAUG---UGGCGCUGUUGU-GC- -5'
6473 3' -48.6 NC_001847.1 + 52287 0.66 0.999324
Target:  5'- cCGGcuuUGUGUGcGCgACCGCGG--GCGCGg -3'
miRNA:   3'- -GCC---ACAUAUaUG-UGGCGCUguUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 50051 0.66 0.999324
Target:  5'- gCGGUGgcggccGCGgguCCGCGcGCGGCGCGg -3'
miRNA:   3'- -GCCACauaua-UGU---GGCGC-UGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 12157 0.66 0.99931
Target:  5'- -cGUGUAUGauUACAUCgacggcgauagcaGCGACAGCGCc -3'
miRNA:   3'- gcCACAUAU--AUGUGG-------------CGCUGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 73655 0.66 0.999166
Target:  5'- aGGcGUAcccgccgcUGUGCGCCaGCGACGcgGCGCu -3'
miRNA:   3'- gCCaCAU--------AUAUGUGG-CGCUGU--UGUGc -5'
6473 3' -48.6 NC_001847.1 + 47913 0.66 0.999166
Target:  5'- gCGGUGa----GCGCUGCG-CAGCGCu -3'
miRNA:   3'- -GCCACauauaUGUGGCGCuGUUGUGc -5'
6473 3' -48.6 NC_001847.1 + 132146 0.66 0.999166
Target:  5'- gCGGUGga---GCGCgCGCGGCuccAGCGCGc -3'
miRNA:   3'- -GCCACauauaUGUG-GCGCUG---UUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 7610 0.66 0.999166
Target:  5'- uCGGUGg----GCGCUGUGGagGGCACGa -3'
miRNA:   3'- -GCCACauauaUGUGGCGCUg-UUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 29333 0.66 0.999166
Target:  5'- gCGGUGga---GCGCgCGCGGCuccAGCGCGc -3'
miRNA:   3'- -GCCACauauaUGUG-GCGCUG---UUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 26976 0.66 0.999057
Target:  5'- aGGUGcgcgcgcagcGCGuCUGCGGCGGCGCGg -3'
miRNA:   3'- gCCACauaua-----UGU-GGCGCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 86461 0.66 0.998998
Target:  5'- uGGacgccgacgGCGCCGaCGGCGGCACGg -3'
miRNA:   3'- gCCacauaua--UGUGGC-GCUGUUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 71864 0.66 0.998978
Target:  5'- gCGGUGg--AaGCgGCCGCGAgcGCGCGg -3'
miRNA:   3'- -GCCACauaUaUG-UGGCGCUguUGUGC- -5'
6473 3' -48.6 NC_001847.1 + 78339 0.66 0.998978
Target:  5'- cCGGcuUGg----GCGCCGCGGCGGCGa- -3'
miRNA:   3'- -GCC--ACauauaUGUGGCGCUGUUGUgc -5'
6473 3' -48.6 NC_001847.1 + 31161 0.66 0.998978
Target:  5'- gCGGUGgccuu-CugCGCGGCcGCGCu -3'
miRNA:   3'- -GCCACauauauGugGCGCUGuUGUGc -5'
6473 3' -48.6 NC_001847.1 + 133974 0.66 0.998978
Target:  5'- gCGGUGgccuu-CugCGCGGCcGCGCu -3'
miRNA:   3'- -GCCACauauauGugGCGCUGuUGUGc -5'
6473 3' -48.6 NC_001847.1 + 30407 0.66 0.998957
Target:  5'- cCGaGUGgccgccGCGCCGCGGCGggcucucGCACGc -3'
miRNA:   3'- -GC-CACauaua-UGUGGCGCUGU-------UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 133220 0.66 0.998957
Target:  5'- cCGaGUGgccgccGCGCCGCGGCGggcucucGCACGc -3'
miRNA:   3'- -GC-CACauaua-UGUGGCGCUGU-------UGUGC- -5'
6473 3' -48.6 NC_001847.1 + 77173 0.66 0.998914
Target:  5'- cCGGUccugccucccgACGCCGCGACcGCGCu -3'
miRNA:   3'- -GCCAcauaua-----UGUGGCGCUGuUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.