miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 5' -49.4 NC_001847.1 + 58889 0.65 0.997945
Target:  5'- cUGCGGcAAgcacggcaaaugcGCCGCGGgcGGGUGUUGCGCa -3'
miRNA:   3'- aGCGCC-UU-------------UGGCGCU--UUCAUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 87198 0.65 0.997869
Target:  5'- cUGCuGGAgaacAACCGCGucggguuccaacugGAAGcGCUGCGCa -3'
miRNA:   3'- aGCG-CCU----UUGGCGC--------------UUUCaUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 4537 0.66 0.996599
Target:  5'- cUCGCGGcgGCCGCccgcGGGUG--GCGCg -3'
miRNA:   3'- -AGCGCCuuUGGCGcu--UUCAUgaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 70299 0.66 0.995993
Target:  5'- gUCGCGGcgcGCCGCGcuGGUcucggaGCUgaaGCGCc -3'
miRNA:   3'- -AGCGCCuu-UGGCGCuuUCA------UGA---UGUG- -5'
6474 5' -49.4 NC_001847.1 + 91669 0.66 0.997586
Target:  5'- cUCGCGGcugcGGCUGCGGcuGcgGCUGCGg -3'
miRNA:   3'- -AGCGCCu---UUGGCGCUuuCa-UGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 52048 0.66 0.997128
Target:  5'- -gGCGGAGGCCcgccCGGAGGUguggGCggGCACc -3'
miRNA:   3'- agCGCCUUUGGc---GCUUUCA----UGa-UGUG- -5'
6474 5' -49.4 NC_001847.1 + 88093 0.66 0.996599
Target:  5'- cCGCGccGGCCGCGAcacgcaccgcGAGUugUAuCGCc -3'
miRNA:   3'- aGCGCcuUUGGCGCU----------UUCAugAU-GUG- -5'
6474 5' -49.4 NC_001847.1 + 91621 0.66 0.997586
Target:  5'- cUCGCGGcugcGGCUGCGGcuGcgGCUGCGg -3'
miRNA:   3'- -AGCGCCu---UUGGCGCUuuCa-UGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 21137 0.66 0.997128
Target:  5'- aUCGCGGucGACCuGUGGAAcGUGauguaUACGCu -3'
miRNA:   3'- -AGCGCCu-UUGG-CGCUUU-CAUg----AUGUG- -5'
6474 5' -49.4 NC_001847.1 + 30183 0.66 0.997128
Target:  5'- -gGCGGAccuGGCCGaCGc-GGUGCgcgGCGCg -3'
miRNA:   3'- agCGCCU---UUGGC-GCuuUCAUGa--UGUG- -5'
6474 5' -49.4 NC_001847.1 + 3320 0.66 0.996599
Target:  5'- -aGCGGGuaggcGGCCGCGcaGGGGUGCguuaugccgACGCu -3'
miRNA:   3'- agCGCCU-----UUGGCGC--UUUCAUGa--------UGUG- -5'
6474 5' -49.4 NC_001847.1 + 33373 0.66 0.996599
Target:  5'- -gGCGGAAggcgcuGCCGCcaaGAAGGaGCUGgACg -3'
miRNA:   3'- agCGCCUU------UGGCG---CUUUCaUGAUgUG- -5'
6474 5' -49.4 NC_001847.1 + 99822 0.66 0.995993
Target:  5'- -gGcCGGggGCCGCuu-AGUGCUuuGCg -3'
miRNA:   3'- agC-GCCuuUGGCGcuuUCAUGAugUG- -5'
6474 5' -49.4 NC_001847.1 + 29366 0.66 0.995993
Target:  5'- -aGCGGcGACCGCGcggcggccGGAGcUGCcGCGCg -3'
miRNA:   3'- agCGCCuUUGGCGC--------UUUC-AUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 27981 0.66 0.996599
Target:  5'- uUCGUGGc-GCCGCGcuGGgccgcGCUGCAg -3'
miRNA:   3'- -AGCGCCuuUGGCGCuuUCa----UGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 132039 0.66 0.996599
Target:  5'- cCGCGGcGGGCCGCGGccugccggccGcGgcCUGCGCg -3'
miRNA:   3'- aGCGCC-UUUGGCGCU----------UuCauGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 4438 0.66 0.997586
Target:  5'- cCGCaGGGAaacgcgcacGCCGUGAAAG-GCcGCGCg -3'
miRNA:   3'- aGCG-CCUU---------UGGCGCUUUCaUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 38329 0.66 0.996599
Target:  5'- gCGCGGucGCCGCc-----GCUGCGCg -3'
miRNA:   3'- aGCGCCuuUGGCGcuuucaUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 63459 0.66 0.997586
Target:  5'- aCGCGGAcGCgGCGGGccugguugcGUACUAC-Ca -3'
miRNA:   3'- aGCGCCUuUGgCGCUUu--------CAUGAUGuG- -5'
6474 5' -49.4 NC_001847.1 + 133432 0.66 0.995993
Target:  5'- gCGCGGcgGCgGCuGAucGUGCUcgACGCc -3'
miRNA:   3'- aGCGCCuuUGgCG-CUuuCAUGA--UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.