miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 5' -49.4 NC_001847.1 + 134548 0.73 0.86984
Target:  5'- cUGCGGAGcgGCCGCGGAGGgccaggACccgGCGCc -3'
miRNA:   3'- aGCGCCUU--UGGCGCUUUCa-----UGa--UGUG- -5'
6474 5' -49.4 NC_001847.1 + 30638 0.74 0.836929
Target:  5'- aCGCGGcgGCCGcCGAAgaggcGGUGCUgGCGCu -3'
miRNA:   3'- aGCGCCuuUGGC-GCUU-----UCAUGA-UGUG- -5'
6474 5' -49.4 NC_001847.1 + 52118 0.74 0.836929
Target:  5'- aCGCGGc--CCGCGguAGUGCUGgGCc -3'
miRNA:   3'- aGCGCCuuuGGCGCuuUCAUGAUgUG- -5'
6474 5' -49.4 NC_001847.1 + 88815 0.74 0.836929
Target:  5'- aCGCGGc--CCGCGGGcggccGUGCUGCGCu -3'
miRNA:   3'- aGCGCCuuuGGCGCUUu----CAUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 133526 0.74 0.836929
Target:  5'- cCGCGGugcuGCCGCGGcgcAGUGCgccGCGCg -3'
miRNA:   3'- aGCGCCuu--UGGCGCUu--UCAUGa--UGUG- -5'
6474 5' -49.4 NC_001847.1 + 30427 0.74 0.845487
Target:  5'- cUCGUGGcgGgCGCGGAGGcgccgggGCUGCACg -3'
miRNA:   3'- -AGCGCCuuUgGCGCUUUCa------UGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 104549 0.74 0.845487
Target:  5'- cCGCGGccAGCCGCGcgcaGAGGUACUcCACc -3'
miRNA:   3'- aGCGCCu-UUGGCGC----UUUCAUGAuGUG- -5'
6474 5' -49.4 NC_001847.1 + 8124 0.73 0.86195
Target:  5'- gCGCGGGGcCCcagggGCGGGcGGUGCUGCGCg -3'
miRNA:   3'- aGCGCCUUuGG-----CGCUU-UCAUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 131921 0.73 0.86195
Target:  5'- gCGCGGgcGgCGCGcGAGcgGCUGCGCg -3'
miRNA:   3'- aGCGCCuuUgGCGCuUUCa-UGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 53372 0.74 0.828165
Target:  5'- cCGCGGgcACCGCGAgcgcgccugccGAGUuuuUUGCGCg -3'
miRNA:   3'- aGCGCCuuUGGCGCU-----------UUCAu--GAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 29316 0.75 0.810054
Target:  5'- cCGCGGAcaagcgAGCCGCGAgcgcGAGUGCgcggGCGg -3'
miRNA:   3'- aGCGCCU------UUGGCGCU----UUCAUGa---UGUg -5'
6474 5' -49.4 NC_001847.1 + 19669 0.75 0.771765
Target:  5'- cCGcCGGAAACUGCGAccGGGUGC-GCGCc -3'
miRNA:   3'- aGC-GCCUUUGGCGCU--UUCAUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 29844 0.8 0.550071
Target:  5'- aCGCGGAGGCUGUGcuGGgcgaGCUGCACa -3'
miRNA:   3'- aGCGCCUUUGGCGCuuUCa---UGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 128202 0.79 0.560625
Target:  5'- -gGCGGAggggGACCGCGGAAGcACUGCGg -3'
miRNA:   3'- agCGCCU----UUGGCGCUUUCaUGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 98211 0.79 0.581893
Target:  5'- cCGCGGAGcuCCGgGAAAGUucuuCUGCACg -3'
miRNA:   3'- aGCGCCUUu-GGCgCUUUCAu---GAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 15526 0.78 0.646388
Target:  5'- -gGCGGGAGCCGCGGGcugcuggcgccGGUGC-GCGCg -3'
miRNA:   3'- agCGCCUUUGGCGCUU-----------UCAUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 36190 0.78 0.646388
Target:  5'- gCGCGGcgAGGCCGCGuacGAGggGCUGCGCg -3'
miRNA:   3'- aGCGCC--UUUGGCGCu--UUCa-UGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 51384 0.77 0.67752
Target:  5'- cUCGCGGAGGCCGCGGucGcggcgccgaaccuUGCggcgGCGCa -3'
miRNA:   3'- -AGCGCCUUUGGCGCUuuC-------------AUGa---UGUG- -5'
6474 5' -49.4 NC_001847.1 + 58758 0.76 0.72088
Target:  5'- -gGCGGcgGCCGCGAcggucgcuGGUGCUGCAg -3'
miRNA:   3'- agCGCCuuUGGCGCUu-------UCAUGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 61419 0.75 0.771765
Target:  5'- cUCGCGGGAGgCGCucGAGGucaaacgcGUACUGCACg -3'
miRNA:   3'- -AGCGCCUUUgGCG--CUUU--------CAUGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.