Results 1 - 20 of 285 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6474 | 5' | -49.4 | NC_001847.1 | + | 37806 | 1.11 | 0.008489 |
Target: 5'- gUCGCGGAAACCGCGAAAGUACUACACu -3' miRNA: 3'- -AGCGCCUUUGGCGCUUUCAUGAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 52017 | 0.87 | 0.242891 |
Target: 5'- cCGCGGcgGCCGCcgaGGAGGUGCUACGCg -3' miRNA: 3'- aGCGCCuuUGGCG---CUUUCAUGAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 132981 | 0.86 | 0.261994 |
Target: 5'- gCGCGGgcGCUGCGAGaccuGGUGCUGCGCa -3' miRNA: 3'- aGCGCCuuUGGCGCUU----UCAUGAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 29844 | 0.8 | 0.550071 |
Target: 5'- aCGCGGAGGCUGUGcuGGgcgaGCUGCACa -3' miRNA: 3'- aGCGCCUUUGGCGCuuUCa---UGAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 25389 | 0.79 | 0.560625 |
Target: 5'- -gGCGGAggggGACCGCGGAAGcACUGCGg -3' miRNA: 3'- agCGCCU----UUGGCGCUUUCaUGAUGUg -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 128202 | 0.79 | 0.560625 |
Target: 5'- -gGCGGAggggGACCGCGGAAGcACUGCGg -3' miRNA: 3'- agCGCCU----UUGGCGCUUUCaUGAUGUg -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 98211 | 0.79 | 0.581893 |
Target: 5'- cCGCGGAGcuCCGgGAAAGUucuuCUGCACg -3' miRNA: 3'- aGCGCCUUu-GGCgCUUUCAu---GAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 122678 | 0.78 | 0.635617 |
Target: 5'- aCGCgGGAAGCCGCGGAGGcuccGCcGCGCg -3' miRNA: 3'- aGCG-CCUUUGGCGCUUUCa---UGaUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 36190 | 0.78 | 0.646388 |
Target: 5'- gCGCGGcgAGGCCGCGuacGAGggGCUGCGCg -3' miRNA: 3'- aGCGCC--UUUGGCGCu--UUCa-UGAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 15526 | 0.78 | 0.646388 |
Target: 5'- -gGCGGGAGCCGCGGGcugcuggcgccGGUGC-GCGCg -3' miRNA: 3'- agCGCCUUUGGCGCUU-----------UCAUGaUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 51384 | 0.77 | 0.67752 |
Target: 5'- cUCGCGGAGGCCGCGGucGcggcgccgaaccuUGCggcgGCGCa -3' miRNA: 3'- -AGCGCCUUUGGCGCUuuC-------------AUGa---UGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 119817 | 0.76 | 0.72088 |
Target: 5'- gCGCGGAuGGCCGCGAucauGUACgggucGCGCa -3' miRNA: 3'- aGCGCCU-UUGGCGCUuu--CAUGa----UGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 57590 | 0.76 | 0.72088 |
Target: 5'- cCGCGGAAAgCGCacGAGGGUGCgcCACg -3' miRNA: 3'- aGCGCCUUUgGCG--CUUUCAUGauGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 58758 | 0.76 | 0.72088 |
Target: 5'- -gGCGGcgGCCGCGAcggucgcuGGUGCUGCAg -3' miRNA: 3'- agCGCCuuUGGCGCUu-------UCAUGAUGUg -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 96825 | 0.76 | 0.761821 |
Target: 5'- -gGCGGcGACCGCGcgGGcguugGCUACACg -3' miRNA: 3'- agCGCCuUUGGCGCuuUCa----UGAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 19669 | 0.75 | 0.771765 |
Target: 5'- cCGcCGGAAACUGCGAccGGGUGC-GCGCc -3' miRNA: 3'- aGC-GCCUUUGGCGCU--UUCAUGaUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 61419 | 0.75 | 0.771765 |
Target: 5'- cUCGCGGGAGgCGCucGAGGucaaacgcGUACUGCACg -3' miRNA: 3'- -AGCGCCUUUgGCG--CUUU--------CAUGAUGUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 123031 | 0.75 | 0.791227 |
Target: 5'- cUCGUccGGggGCCGCuGGAAGUACggcCGCg -3' miRNA: 3'- -AGCG--CCuuUGGCG-CUUUCAUGau-GUG- -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 29316 | 0.75 | 0.810054 |
Target: 5'- cCGCGGAcaagcgAGCCGCGAgcgcGAGUGCgcggGCGg -3' miRNA: 3'- aGCGCCU------UUGGCGCU----UUCAUGa---UGUg -5' |
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6474 | 5' | -49.4 | NC_001847.1 | + | 68933 | 0.74 | 0.819203 |
Target: 5'- gCGCGGcgGCCGCGG----GCUGCGCc -3' miRNA: 3'- aGCGCCuuUGGCGCUuucaUGAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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