miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6474 5' -49.4 NC_001847.1 + 93 0.7 0.953698
Target:  5'- gCGCGGAG--CGCGAGGGUAggguugGCACa -3'
miRNA:   3'- aGCGCCUUugGCGCUUUCAUga----UGUG- -5'
6474 5' -49.4 NC_001847.1 + 1626 0.69 0.979429
Target:  5'- cCGCGGcagcACCGCGGcgcgcAGGUACacgUGCGCc -3'
miRNA:   3'- aGCGCCuu--UGGCGCU-----UUCAUG---AUGUG- -5'
6474 5' -49.4 NC_001847.1 + 1736 0.74 0.845487
Target:  5'- cCGCGGccAGCCGCGcgcaGAGGUACUcCACc -3'
miRNA:   3'- aGCGCCu-UUGGCGC----UUUCAUGAuGUG- -5'
6474 5' -49.4 NC_001847.1 + 2880 0.71 0.92963
Target:  5'- gCGCGGGccgccgcGCCGCGcgucGAGUACcGCGCg -3'
miRNA:   3'- aGCGCCUu------UGGCGCu---UUCAUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 3320 0.66 0.996599
Target:  5'- -aGCGGGuaggcGGCCGCGcaGGGGUGCguuaugccgACGCu -3'
miRNA:   3'- agCGCCU-----UUGGCGC--UUUCAUGa--------UGUG- -5'
6474 5' -49.4 NC_001847.1 + 3766 0.67 0.994514
Target:  5'- gUCGCcgucGAgcAGCCcggGCGGGAuGUGCUGCACg -3'
miRNA:   3'- -AGCGc---CU--UUGG---CGCUUU-CAUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 4438 0.66 0.997586
Target:  5'- cCGCaGGGAaacgcgcacGCCGUGAAAG-GCcGCGCg -3'
miRNA:   3'- aGCG-CCUU---------UGGCGCUUUCaUGaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 4537 0.66 0.996599
Target:  5'- cUCGCGGcgGCCGCccgcGGGUG--GCGCg -3'
miRNA:   3'- -AGCGCCuuUGGCGcu--UUCAUgaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 5204 0.72 0.89898
Target:  5'- gCGCGGcAAgcgcGCCGCGAcGGaaGCUGCGCa -3'
miRNA:   3'- aGCGCC-UU----UGGCGCUuUCa-UGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 5934 0.7 0.965082
Target:  5'- -aGCGGucGCCGCGAGcaagcgcgcGUACgUACGCg -3'
miRNA:   3'- agCGCCuuUGGCGCUUu--------CAUG-AUGUG- -5'
6474 5' -49.4 NC_001847.1 + 6092 0.68 0.983726
Target:  5'- cUCGCGGAGG-CGCGAGAcgcccGCgagGCGCg -3'
miRNA:   3'- -AGCGCCUUUgGCGCUUUca---UGa--UGUG- -5'
6474 5' -49.4 NC_001847.1 + 7268 0.7 0.961532
Target:  5'- -gGCGGggGCaCGCGAGacgcuccgcAGUACgagccgcugGCGCg -3'
miRNA:   3'- agCGCCuuUG-GCGCUU---------UCAUGa--------UGUG- -5'
6474 5' -49.4 NC_001847.1 + 8124 0.73 0.86195
Target:  5'- gCGCGGGGcCCcagggGCGGGcGGUGCUGCGCg -3'
miRNA:   3'- aGCGCCUUuGG-----CGCUU-UCAUGAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 10916 0.71 0.944852
Target:  5'- gCGCGGuacuACCGCGAggcGAGccgGCUgGCGCg -3'
miRNA:   3'- aGCGCCuu--UGGCGCU---UUCa--UGA-UGUG- -5'
6474 5' -49.4 NC_001847.1 + 11512 0.71 0.934968
Target:  5'- cCGCGGGAacuggcacguaGCCGCc-GGGUGCUGCGu -3'
miRNA:   3'- aGCGCCUU-----------UGGCGcuUUCAUGAUGUg -5'
6474 5' -49.4 NC_001847.1 + 11572 0.71 0.940041
Target:  5'- gUGCGGcuGCCGCGGugccGGUugcuuCUGCGCu -3'
miRNA:   3'- aGCGCCuuUGGCGCUu---UCAu----GAUGUG- -5'
6474 5' -49.4 NC_001847.1 + 12079 0.68 0.990246
Target:  5'- cCGCGGAGcGCCGCGGGuccgGCgccCGCg -3'
miRNA:   3'- aGCGCCUU-UGGCGCUUuca-UGau-GUG- -5'
6474 5' -49.4 NC_001847.1 + 12903 0.7 0.952436
Target:  5'- aCGCGGAAgcgcgcgccgugccGCCGCGggGGc---GCGCg -3'
miRNA:   3'- aGCGCCUU--------------UGGCGCuuUCaugaUGUG- -5'
6474 5' -49.4 NC_001847.1 + 14085 0.71 0.934968
Target:  5'- cUCGUGGAcAUCGCGGAGGcGCUggcggaccacccGCACc -3'
miRNA:   3'- -AGCGCCUuUGGCGCUUUCaUGA------------UGUG- -5'
6474 5' -49.4 NC_001847.1 + 14790 0.67 0.994514
Target:  5'- aCGCGGcguacaAAACCgcaGCGgcGGaGCUGCGCg -3'
miRNA:   3'- aGCGCC------UUUGG---CGCuuUCaUGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.