miRNA display CGI


Results 1 - 20 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 3' -57.9 NC_001847.1 + 48162 0.65 0.844595
Target:  5'- gGCGCGCgccgGCcCGGccgGCGGcguccugcugugccGCGCCGGc -3'
miRNA:   3'- -UGCGCGa---CGcGCUua-UGCU--------------CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 57092 0.66 0.805274
Target:  5'- -aGCGCUGCGCuGGAc-CGccGCGCCGc -3'
miRNA:   3'- ugCGCGACGCG-CUUauGCu-CGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 24046 0.66 0.805274
Target:  5'- cCGUGCcGCGCGAccuucuCGcGCaGCCGGg -3'
miRNA:   3'- uGCGCGaCGCGCUuau---GCuCG-CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 104737 0.66 0.805274
Target:  5'- cCGcCGCgGCGCGGcgGCcacucGGGCcGCCGGc -3'
miRNA:   3'- uGC-GCGaCGCGCUuaUG-----CUCG-CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 38013 0.66 0.805274
Target:  5'- cUGCaGCUcGCGCGggUGCuguGGGCGCgCGc -3'
miRNA:   3'- uGCG-CGA-CGCGCuuAUG---CUCGCG-GCc -5'
6476 3' -57.9 NC_001847.1 + 53809 0.66 0.805274
Target:  5'- cACGUGCaagGCGUGuc-GCGGGCGCgGc -3'
miRNA:   3'- -UGCGCGa--CGCGCuuaUGCUCGCGgCc -5'
6476 3' -57.9 NC_001847.1 + 17983 0.66 0.805274
Target:  5'- gGCGUGCUGUccucugGCGuAGCGUCGGg -3'
miRNA:   3'- -UGCGCGACGcgcuuaUGC-UCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 27875 0.66 0.805274
Target:  5'- cCGCGCUcgaGCGguUGGAUgGCGAGguCGCCGGc -3'
miRNA:   3'- uGCGCGA---CGC--GCUUA-UGCUC--GCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 44237 0.66 0.813951
Target:  5'- -gGUGCggGCGUGGGgcUGAgcGCGCCGGc -3'
miRNA:   3'- ugCGCGa-CGCGCUUauGCU--CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 74020 0.66 0.805274
Target:  5'- cUGCGCcgGCGCGugccgcugGCGgacguGGCGCUGGc -3'
miRNA:   3'- uGCGCGa-CGCGCuua-----UGC-----UCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 82869 0.66 0.805274
Target:  5'- cACGUGCU-CGCccGUGCGGGCGCg-- -3'
miRNA:   3'- -UGCGCGAcGCGcuUAUGCUCGCGgcc -5'
6476 3' -57.9 NC_001847.1 + 79269 0.66 0.805274
Target:  5'- uCGgGCcGCGCGGcgaaGCG-GUGCCGGu -3'
miRNA:   3'- uGCgCGaCGCGCUua--UGCuCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 105820 0.66 0.805274
Target:  5'- cGCGCGCUccacCGCGuc-GCGGgccGCGCCGa -3'
miRNA:   3'- -UGCGCGAc---GCGCuuaUGCU---CGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 77525 0.66 0.805274
Target:  5'- uCGCGCgUGCcuGCGAGcGCGAGgGCgUGGc -3'
miRNA:   3'- uGCGCG-ACG--CGCUUaUGCUCgCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 99255 0.66 0.805274
Target:  5'- uCGCaGCcgGCGCGGgaguAUAUuuGCGCCGGc -3'
miRNA:   3'- uGCG-CGa-CGCGCU----UAUGcuCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 114134 0.66 0.808764
Target:  5'- cGCGCGCUcgGCGUGAGUucgcaccagcaugcaGCG-GCGCgCGc -3'
miRNA:   3'- -UGCGCGA--CGCGCUUA---------------UGCuCGCG-GCc -5'
6476 3' -57.9 NC_001847.1 + 130645 0.66 0.805274
Target:  5'- gACGCGgaGaucgGCGAggACGccGGCGCCaGGg -3'
miRNA:   3'- -UGCGCgaCg---CGCUuaUGC--UCGCGG-CC- -5'
6476 3' -57.9 NC_001847.1 + 63388 0.66 0.811365
Target:  5'- -gGCGuCUGCGCGAugcgccgcagccucGcACGggagcgcacgcGGCGCCGGc -3'
miRNA:   3'- ugCGC-GACGCGCU--------------UaUGC-----------UCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 21745 0.66 0.813951
Target:  5'- gACGCuacGCUGcCGCGAcGUGCuGGCGUCGc -3'
miRNA:   3'- -UGCG---CGAC-GCGCU-UAUGcUCGCGGCc -5'
6476 3' -57.9 NC_001847.1 + 43246 0.66 0.813951
Target:  5'- gGCGCGC-GgGCGGc-GCG-GCGcCCGGg -3'
miRNA:   3'- -UGCGCGaCgCGCUuaUGCuCGC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.