miRNA display CGI


Results 1 - 20 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 3' -57.9 NC_001847.1 + 10 0.67 0.796445
Target:  5'- cCGCGCcGCGCGGGcccccUGCGAcC-CCGGg -3'
miRNA:   3'- uGCGCGaCGCGCUU-----AUGCUcGcGGCC- -5'
6476 3' -57.9 NC_001847.1 + 46 0.68 0.722297
Target:  5'- cCGCGCgGCGCGugcauugcggcggGCGGGgGCgGGg -3'
miRNA:   3'- uGCGCGaCGCGCuua----------UGCUCgCGgCC- -5'
6476 3' -57.9 NC_001847.1 + 874 0.7 0.590942
Target:  5'- cACGCGCg--GCGGcgGCccGCGCCGGg -3'
miRNA:   3'- -UGCGCGacgCGCUuaUGcuCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 953 0.69 0.6414
Target:  5'- cGCGCGCcgcuccacgcUGCGCcgg-GCGucuauGCGCCGGc -3'
miRNA:   3'- -UGCGCG----------ACGCGcuuaUGCu----CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 1347 0.77 0.245059
Target:  5'- cGCGCcCUGCGCGGccAUGuccuugcgcccguCGAGCGCCGGc -3'
miRNA:   3'- -UGCGcGACGCGCU--UAU-------------GCUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 1392 0.67 0.78747
Target:  5'- cACGCGCUGC-CGGuacuCGcGCGgCGGc -3'
miRNA:   3'- -UGCGCGACGcGCUuau-GCuCGCgGCC- -5'
6476 3' -57.9 NC_001847.1 + 1533 0.66 0.813951
Target:  5'- -gGCGC-GCGCGAA----GGCGcCCGGg -3'
miRNA:   3'- ugCGCGaCGCGCUUaugcUCGC-GGCC- -5'
6476 3' -57.9 NC_001847.1 + 1581 0.67 0.769121
Target:  5'- gGCGCGCgccaGCGCGccgcucggGCcAGCGCgCGGc -3'
miRNA:   3'- -UGCGCGa---CGCGCuua-----UGcUCGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 1806 0.67 0.796445
Target:  5'- cACGCcCUGCGCGc---CGAGCGCg-- -3'
miRNA:   3'- -UGCGcGACGCGCuuauGCUCGCGgcc -5'
6476 3' -57.9 NC_001847.1 + 1924 0.66 0.805274
Target:  5'- cCGcCGCgGCGCGGcgGCcacucGGGCcGCCGGc -3'
miRNA:   3'- uGC-GCGaCGCGCUuaUG-----CUCG-CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 2060 0.71 0.560961
Target:  5'- cACGCGCcGCcgcaGCGGuggcgGCGAGCGCCc- -3'
miRNA:   3'- -UGCGCGaCG----CGCUua---UGCUCGCGGcc -5'
6476 3' -57.9 NC_001847.1 + 2130 0.76 0.30998
Target:  5'- -aGCGCcucgGgGuCGAAgGCGAGCGCCGGg -3'
miRNA:   3'- ugCGCGa---CgC-GCUUaUGCUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 2181 0.67 0.78747
Target:  5'- cCGCGCcgccUGgGCGGcGUGCGGGCGCa-- -3'
miRNA:   3'- uGCGCG----ACgCGCU-UAUGCUCGCGgcc -5'
6476 3' -57.9 NC_001847.1 + 2229 0.66 0.830814
Target:  5'- aGCGcCGCgGCGCuGGGcGCGGGCGugugguaguccCCGGg -3'
miRNA:   3'- -UGC-GCGaCGCG-CUUaUGCUCGC-----------GGCC- -5'
6476 3' -57.9 NC_001847.1 + 2377 0.68 0.740726
Target:  5'- cGCGCGCc-CGCGAAgacgGCGGugacGCGCuCGGc -3'
miRNA:   3'- -UGCGCGacGCGCUUa---UGCU----CGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 2579 0.7 0.619165
Target:  5'- gGCGC-CUGCGCGGccgccgcggccgcAcGCGAgcccgccGCGCCGGa -3'
miRNA:   3'- -UGCGcGACGCGCU-------------UaUGCU-------CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 2741 0.66 0.838984
Target:  5'- -aGCGCaGgGCGGGaGCGAGCGa-GGg -3'
miRNA:   3'- ugCGCGaCgCGCUUaUGCUCGCggCC- -5'
6476 3' -57.9 NC_001847.1 + 2750 0.7 0.601003
Target:  5'- cCG-GCccgGCGCGGcgGCGccGGCGCCGGc -3'
miRNA:   3'- uGCgCGa--CGCGCUuaUGC--UCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 2972 0.7 0.601003
Target:  5'- gGCGCGCaGCGCcgccgggGCcGGCGCUGGa -3'
miRNA:   3'- -UGCGCGaCGCGcuua---UGcUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 3007 0.66 0.805274
Target:  5'- cGCGCGCUccacCGCGuc-GCGGgccGCGCCGa -3'
miRNA:   3'- -UGCGCGAc---GCGCuuaUGCU---CGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.