Results 1 - 20 of 805 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6476 | 3' | -57.9 | NC_001847.1 | + | 36709 | 1.1 | 0.001564 |
Target: 5'- cACGCGCUGCGCGAAUACGAGCGCCGGa -3' miRNA: 3'- -UGCGCGACGCGCUUAUGCUCGCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 54366 | 0.83 | 0.102145 |
Target: 5'- gACGCGCUGCGCGAGcugcugcgGCGGGCgGCCGcGg -3' miRNA: 3'- -UGCGCGACGCGCUUa-------UGCUCG-CGGC-C- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 89043 | 0.82 | 0.128881 |
Target: 5'- uGCGCGCUGgGCGAcgGCauGGcGCGCCGGg -3' miRNA: 3'- -UGCGCGACgCGCUuaUG--CU-CGCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 103002 | 0.82 | 0.135645 |
Target: 5'- gGCGUGCgcggGCGCGGcgGCGcccAGCGCCGGc -3' miRNA: 3'- -UGCGCGa---CGCGCUuaUGC---UCGCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 34156 | 0.81 | 0.15016 |
Target: 5'- aGCGCGCUGCGCGAGgcggcugagGCGcugcGgGCCGGg -3' miRNA: 3'- -UGCGCGACGCGCUUa--------UGCu---CgCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 110967 | 0.8 | 0.166074 |
Target: 5'- aGCGCcacGCUGUGCGAGUACGGcugcGCGCCGu -3' miRNA: 3'- -UGCG---CGACGCGCUUAUGCU----CGCGGCc -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 52281 | 0.8 | 0.174586 |
Target: 5'- cGCGCGCcggcuuugugUGCGCGAccGCGGGCGCgGGc -3' miRNA: 3'- -UGCGCG----------ACGCGCUuaUGCUCGCGgCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 115684 | 0.79 | 0.183485 |
Target: 5'- aGCG-GCUGCGCGGggGCGAGaGCCGGc -3' miRNA: 3'- -UGCgCGACGCGCUuaUGCUCgCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 35841 | 0.79 | 0.192782 |
Target: 5'- gACGCGCUGCGCGAGcUGa-GGCGCCa- -3' miRNA: 3'- -UGCGCGACGCGCUU-AUgcUCGCGGcc -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 13077 | 0.79 | 0.196133 |
Target: 5'- cGCGCuGCUGCGCGAGUGCGcaacuGCcauuuuuugucgcgGCCGGg -3' miRNA: 3'- -UGCG-CGACGCGCUUAUGCu----CG--------------CGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 134773 | 0.79 | 0.20249 |
Target: 5'- gGCGCGCgGCGCGcgggGCGGGCcCCGGg -3' miRNA: 3'- -UGCGCGaCGCGCuua-UGCUCGcGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 53588 | 0.79 | 0.20249 |
Target: 5'- cGCGCaGCUGCGCGGGgccgGCGAGCucgGCCGc -3' miRNA: 3'- -UGCG-CGACGCGCUUa---UGCUCG---CGGCc -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 31960 | 0.79 | 0.20249 |
Target: 5'- gGCGCGCgGCGCGcgggGCGGGCcCCGGg -3' miRNA: 3'- -UGCGCGaCGCGCuua-UGCUCGcGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 133188 | 0.79 | 0.207501 |
Target: 5'- -gGCGCcGCccgGCGAggACGAGCGCCGGc -3' miRNA: 3'- ugCGCGaCG---CGCUuaUGCUCGCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 30375 | 0.79 | 0.207501 |
Target: 5'- -gGCGCcGCccgGCGAggACGAGCGCCGGc -3' miRNA: 3'- ugCGCGaCG---CGCUuaUGCUCGCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 62628 | 0.78 | 0.217845 |
Target: 5'- cGCGCGC-GCGCGAAUggggcguacucgGCGAGC-CCGGc -3' miRNA: 3'- -UGCGCGaCGCGCUUA------------UGCUCGcGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 92282 | 0.78 | 0.223181 |
Target: 5'- gGCGCGgUGCGCGGcUAgGaAGUGCCGGu -3' miRNA: 3'- -UGCGCgACGCGCUuAUgC-UCGCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 70241 | 0.78 | 0.228627 |
Target: 5'- gACGCGCgGgGCGGGcgGCGGGCGCgCGGc -3' miRNA: 3'- -UGCGCGaCgCGCUUa-UGCUCGCG-GCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 35561 | 0.78 | 0.228627 |
Target: 5'- gGCGCGCgacCGCGAcgA-GGGCGCCGGg -3' miRNA: 3'- -UGCGCGac-GCGCUuaUgCUCGCGGCC- -5' |
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6476 | 3' | -57.9 | NC_001847.1 | + | 35232 | 0.78 | 0.234186 |
Target: 5'- gACGUGCUGCagGCGGccgGCGGGCGCgCGGc -3' miRNA: 3'- -UGCGCGACG--CGCUua-UGCUCGCG-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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