miRNA display CGI


Results 1 - 20 of 805 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 3' -57.9 NC_001847.1 + 4204 0.77 0.272482
Target:  5'- cGCGCGCaggcagccaaagcccUGCGCGGugccgGCGcGCGCCGGc -3'
miRNA:   3'- -UGCGCG---------------ACGCGCUua---UGCuCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 22181 0.77 0.245643
Target:  5'- uCGCGC--CGCGAAUgcGCGGGCGCUGGg -3'
miRNA:   3'- uGCGCGacGCGCUUA--UGCUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 50266 0.77 0.245643
Target:  5'- gACGCGCUGgGCGcGUACGuGgGCCGc -3'
miRNA:   3'- -UGCGCGACgCGCuUAUGCuCgCGGCc -5'
6476 3' -57.9 NC_001847.1 + 65445 0.77 0.245643
Target:  5'- cGCGCGC--CGCGGAc-CGAGCGCCGGc -3'
miRNA:   3'- -UGCGCGacGCGCUUauGCUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 14558 0.77 0.251543
Target:  5'- cGCGcCGCaGCGCGggUgcugGCGGGCGCgCGGc -3'
miRNA:   3'- -UGC-GCGaCGCGCuuA----UGCUCGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 77723 0.77 0.263695
Target:  5'- uGCGCGCUugGCGCGcGUGCGAGgccCGcCCGGa -3'
miRNA:   3'- -UGCGCGA--CGCGCuUAUGCUC---GC-GGCC- -5'
6476 3' -57.9 NC_001847.1 + 59911 0.77 0.263695
Target:  5'- gGCGCGC-GCGCGcg-GCGAGaGCCGGc -3'
miRNA:   3'- -UGCGCGaCGCGCuuaUGCUCgCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 99735 0.77 0.263695
Target:  5'- aGC-CGCUGCGCGggUGCGuugGCCGGc -3'
miRNA:   3'- -UGcGCGACGCGCuuAUGCucgCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 28009 0.77 0.269947
Target:  5'- aGCGCGCgGCGUGccgcgcuUACGAGCGCCu- -3'
miRNA:   3'- -UGCGCGaCGCGCuu-----AUGCUCGCGGcc -5'
6476 3' -57.9 NC_001847.1 + 104160 0.77 0.245059
Target:  5'- cGCGCcCUGCGCGGccAUGuccuugcgcccguCGAGCGCCGGc -3'
miRNA:   3'- -UGCGcGACGCGCU--UAU-------------GCUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 77341 0.78 0.239857
Target:  5'- uGCGCGCUGCugggcgGCGAcacgccGUGCGAcgcgugGCGCCGGc -3'
miRNA:   3'- -UGCGCGACG------CGCU------UAUGCU------CGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 35232 0.78 0.234186
Target:  5'- gACGUGCUGCagGCGGccgGCGGGCGCgCGGc -3'
miRNA:   3'- -UGCGCGACG--CGCUua-UGCUCGCG-GCC- -5'
6476 3' -57.9 NC_001847.1 + 34156 0.81 0.15016
Target:  5'- aGCGCGCUGCGCGAGgcggcugagGCGcugcGgGCCGGg -3'
miRNA:   3'- -UGCGCGACGCGCUUa--------UGCu---CgCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 52281 0.8 0.174586
Target:  5'- cGCGCGCcggcuuugugUGCGCGAccGCGGGCGCgGGc -3'
miRNA:   3'- -UGCGCG----------ACGCGCUuaUGCUCGCGgCC- -5'
6476 3' -57.9 NC_001847.1 + 35841 0.79 0.192782
Target:  5'- gACGCGCUGCGCGAGcUGa-GGCGCCa- -3'
miRNA:   3'- -UGCGCGACGCGCUU-AUgcUCGCGGcc -5'
6476 3' -57.9 NC_001847.1 + 13077 0.79 0.196133
Target:  5'- cGCGCuGCUGCGCGAGUGCGcaacuGCcauuuuuugucgcgGCCGGg -3'
miRNA:   3'- -UGCG-CGACGCGCUUAUGCu----CG--------------CGGCC- -5'
6476 3' -57.9 NC_001847.1 + 134773 0.79 0.20249
Target:  5'- gGCGCGCgGCGCGcgggGCGGGCcCCGGg -3'
miRNA:   3'- -UGCGCGaCGCGCuua-UGCUCGcGGCC- -5'
6476 3' -57.9 NC_001847.1 + 133188 0.79 0.207501
Target:  5'- -gGCGCcGCccgGCGAggACGAGCGCCGGc -3'
miRNA:   3'- ugCGCGaCG---CGCUuaUGCUCGCGGCC- -5'
6476 3' -57.9 NC_001847.1 + 62628 0.78 0.217845
Target:  5'- cGCGCGC-GCGCGAAUggggcguacucgGCGAGC-CCGGc -3'
miRNA:   3'- -UGCGCGaCGCGCUUA------------UGCUCGcGGCC- -5'
6476 3' -57.9 NC_001847.1 + 35561 0.78 0.228627
Target:  5'- gGCGCGCgacCGCGAcgA-GGGCGCCGGg -3'
miRNA:   3'- -UGCGCGac-GCGCUuaUgCUCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.