miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6476 5' -55.5 NC_001847.1 + 134959 0.66 0.87653
Target:  5'- gGGCGGGgGCggggGCC-CCGggGGCcaaGACg -3'
miRNA:   3'- -UCGUUCaCGa---CGGaGGCuuUCGc--CUG- -5'
6476 5' -55.5 NC_001847.1 + 134151 0.72 0.567846
Target:  5'- gAGCGcGUGCcGCCgCCGgcGGCGGAa -3'
miRNA:   3'- -UCGUuCACGaCGGaGGCuuUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 134110 0.66 0.87653
Target:  5'- cGCucGUGCUGCUgcggcgcgCCGcgGGCGG-Cg -3'
miRNA:   3'- uCGuuCACGACGGa-------GGCuuUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 133767 0.67 0.845262
Target:  5'- cAGCGcGUGCUGCCggcgCuCGAcGGGCgcaaGGACa -3'
miRNA:   3'- -UCGUuCACGACGGa---G-GCU-UUCG----CCUG- -5'
6476 5' -55.5 NC_001847.1 + 131933 0.66 0.869043
Target:  5'- cGCGAGcgGCUGCg--CGAGcuGGCGGACc -3'
miRNA:   3'- uCGUUCa-CGACGgagGCUU--UCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 131656 0.67 0.836917
Target:  5'- cGGCGcc-GCUGCCgCCGGucGgGGACg -3'
miRNA:   3'- -UCGUucaCGACGGaGGCUuuCgCCUG- -5'
6476 5' -55.5 NC_001847.1 + 131124 0.7 0.693266
Target:  5'- cGGCGcGGUauGCUG-CUCgGggGGCGGACu -3'
miRNA:   3'- -UCGU-UCA--CGACgGAGgCuuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 130707 0.7 0.693266
Target:  5'- cGCgGAGUGC-GCCgaggCCGAGggGGCGGAg -3'
miRNA:   3'- uCG-UUCACGaCGGa---GGCUU--UCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 129668 0.67 0.853402
Target:  5'- cGGCGGccGCUGCCgccgCCGcagAGAGCGGcCg -3'
miRNA:   3'- -UCGUUcaCGACGGa---GGC---UUUCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 129314 0.68 0.792423
Target:  5'- uGCAAG-GCggGCCUgCCGGgcGCGGGg -3'
miRNA:   3'- uCGUUCaCGa-CGGA-GGCUuuCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 127940 0.7 0.682891
Target:  5'- gAGCGGGcggcggccgcgGCUGCCUaaagCCGAA-GCGGAUg -3'
miRNA:   3'- -UCGUUCa----------CGACGGA----GGCUUuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 126041 0.67 0.836917
Target:  5'- gGGCcuGcGgUGgCUCCGAGAGCGGcACc -3'
miRNA:   3'- -UCGuuCaCgACgGAGGCUUUCGCC-UG- -5'
6476 5' -55.5 NC_001847.1 + 125444 0.7 0.693266
Target:  5'- cGCAGG-GC-GCgUCCGGggaGGGCGGGCu -3'
miRNA:   3'- uCGUUCaCGaCGgAGGCU---UUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 124912 0.66 0.87653
Target:  5'- cGGCAGGcGC-GCCgggggCGAcAGCGGGCg -3'
miRNA:   3'- -UCGUUCaCGaCGGag---GCUuUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 124083 0.67 0.810742
Target:  5'- aGGCAGGUGaaCUGCCgCCGcu-GCGGcCa -3'
miRNA:   3'- -UCGUUCAC--GACGGaGGCuuuCGCCuG- -5'
6476 5' -55.5 NC_001847.1 + 121406 0.69 0.744134
Target:  5'- gGGCAGGaGCUGCg-UgGAGGGCGGAg -3'
miRNA:   3'- -UCGUUCaCGACGgaGgCUUUCGCCUg -5'
6476 5' -55.5 NC_001847.1 + 121272 0.66 0.890811
Target:  5'- cAGCGgcAGUGCcGCgUCCGcuAGCaGGCu -3'
miRNA:   3'- -UCGU--UCACGaCGgAGGCuuUCGcCUG- -5'
6476 5' -55.5 NC_001847.1 + 120238 0.66 0.890811
Target:  5'- cGGCGAG-GCagucgGCCUgCGc--GCGGACg -3'
miRNA:   3'- -UCGUUCaCGa----CGGAgGCuuuCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 119369 0.72 0.567846
Target:  5'- cGGCGcuUGCcGCCggCGAAAGCGGGCc -3'
miRNA:   3'- -UCGUucACGaCGGagGCUUUCGCCUG- -5'
6476 5' -55.5 NC_001847.1 + 117039 0.68 0.783031
Target:  5'- cGGCGGGgGCUcGCCga-GGAGGCGGAa -3'
miRNA:   3'- -UCGUUCaCGA-CGGaggCUUUCGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.