miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6478 3' -55.9 NC_001847.1 + 134861 0.71 0.615457
Target:  5'- -----gGCgCCCGCGCgGGCUcgGCGGCc -3'
miRNA:   3'- uuuauaUGaGGGCGCGgCCGA--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 134226 0.75 0.374268
Target:  5'- -----gGCuUCCCgGCGCCGGCggGCGGCg -3'
miRNA:   3'- uuuauaUG-AGGG-CGCGGCCGa-CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 133891 0.67 0.824188
Target:  5'- -----gGCUCggCGCGCC-GCUGCGGCc -3'
miRNA:   3'- uuuauaUGAGg-GCGCGGcCGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 133656 0.67 0.80642
Target:  5'- ----cUAC-CCCgagGCGCCGccGCUGCGGCu -3'
miRNA:   3'- uuuauAUGaGGG---CGCGGC--CGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 133546 0.69 0.698902
Target:  5'- ---aGUGCgCCgCGCGCUGGCccgaGCGGCg -3'
miRNA:   3'- uuuaUAUGaGG-GCGCGGCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 133406 0.67 0.824188
Target:  5'- ---aGUACcUCUGCGCgCGGCUggccGCGGCg -3'
miRNA:   3'- uuuaUAUGaGGGCGCG-GCCGA----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 132795 0.66 0.857463
Target:  5'- -----cGCggCCGgGCCGGC-GCGGCg -3'
miRNA:   3'- uuuauaUGagGGCgCGGCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 132258 0.66 0.865266
Target:  5'- ---gGUACUCgaCGCG-CGGCgcgGCGGCc -3'
miRNA:   3'- uuuaUAUGAGg-GCGCgGCCGa--CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 132162 0.69 0.719364
Target:  5'- -----gGCUCCaGCGCgCGGCcccgGCGGCg -3'
miRNA:   3'- uuuauaUGAGGgCGCG-GCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 132106 0.67 0.832801
Target:  5'- ---cGUGCUCCgGgcCGCCGaGCUGCucGGCg -3'
miRNA:   3'- uuuaUAUGAGGgC--GCGGC-CGACG--CUG- -5'
6478 3' -55.9 NC_001847.1 + 132021 0.67 0.815391
Target:  5'- -----gGCUCCCgGUGCucuCGGCcGCGGCg -3'
miRNA:   3'- uuuauaUGAGGG-CGCG---GCCGaCGCUG- -5'
6478 3' -55.9 NC_001847.1 + 131939 0.67 0.832801
Target:  5'- -----gGCaCgUGCGCCGGCgaugGCGGCg -3'
miRNA:   3'- uuuauaUGaGgGCGCGGCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 131822 0.67 0.80642
Target:  5'- --------gCCgGCGCCGGCggcaGCGGCg -3'
miRNA:   3'- uuuauaugaGGgCGCGGCCGa---CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 131244 0.73 0.463861
Target:  5'- -----gGCgCCCGCGCUGGCUacgccGCGGCg -3'
miRNA:   3'- uuuauaUGaGGGCGCGGCCGA-----CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 130735 0.66 0.872848
Target:  5'- -----cGCUgCCGcCGUCGGCgucgacgGCGGCg -3'
miRNA:   3'- uuuauaUGAgGGC-GCGGCCGa------CGCUG- -5'
6478 3' -55.9 NC_001847.1 + 130530 0.7 0.667794
Target:  5'- -----gGCcgCCCGCGCCGagcuggccgaGCUGUGGCg -3'
miRNA:   3'- uuuauaUGa-GGGCGCGGC----------CGACGCUG- -5'
6478 3' -55.9 NC_001847.1 + 130269 0.66 0.865266
Target:  5'- aAAAUGgGCUUCCGCG-UGGCUGUGcCc -3'
miRNA:   3'- -UUUAUaUGAGGGCGCgGCCGACGCuG- -5'
6478 3' -55.9 NC_001847.1 + 126067 0.67 0.815391
Target:  5'- ---gGUGCUCgUCGaGCCGGCUGCa-- -3'
miRNA:   3'- uuuaUAUGAG-GGCgCGGCCGACGcug -5'
6478 3' -55.9 NC_001847.1 + 125061 0.79 0.216104
Target:  5'- --uUGUGCUCCCGCGCgCGGCgggGCG-Cu -3'
miRNA:   3'- uuuAUAUGAGGGCGCG-GCCGa--CGCuG- -5'
6478 3' -55.9 NC_001847.1 + 123808 0.69 0.709167
Target:  5'- ---aGUGCUCCCGCuCCGGCgccaGCcGCc -3'
miRNA:   3'- uuuaUAUGAGGGCGcGGCCGa---CGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.