miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6479 5' -57.9 NC_001847.1 + 35438 0.66 0.817418
Target:  5'- cAUCGCGCUGA-CUUuacggcGGCCCgCGccGCGc -3'
miRNA:   3'- cUAGCGCGACUaGAA------CCGGG-GCu-CGC- -5'
6479 5' -57.9 NC_001847.1 + 9902 0.67 0.734068
Target:  5'- cGAcCGCG-UGGUCUcgGGCCCCGcccccGCGg -3'
miRNA:   3'- -CUaGCGCgACUAGAa-CCGGGGCu----CGC- -5'
6479 5' -57.9 NC_001847.1 + 104535 0.68 0.674127
Target:  5'- ---gGCGCUGcgCggcGGCCCCGGGg- -3'
miRNA:   3'- cuagCGCGACuaGaa-CCGGGGCUCgc -5'
6479 5' -57.9 NC_001847.1 + 35669 1.09 0.001642
Target:  5'- gGAUCGCGCUGAUCUUGGCCCCGAGCGg -3'
miRNA:   3'- -CUAGCGCGACUAGAACCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 5901 0.66 0.790835
Target:  5'- cGcgCGCGUUGGUC-UGGCagCCGcuaGGCGg -3'
miRNA:   3'- -CuaGCGCGACUAGaACCGg-GGC---UCGC- -5'
6479 5' -57.9 NC_001847.1 + 83923 0.66 0.789926
Target:  5'- ---aGCGCUaGAUCUUgcaccacGGCCagcaCCGAGCGc -3'
miRNA:   3'- cuagCGCGA-CUAGAA-------CCGG----GGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 128358 0.66 0.781678
Target:  5'- --aCGCGCUGcuggUGGCCaCgGAGCa -3'
miRNA:   3'- cuaGCGCGACuagaACCGG-GgCUCGc -5'
6479 5' -57.9 NC_001847.1 + 30632 0.66 0.781678
Target:  5'- uGAUCGUGCUcGAcgCcgUGGaCCCCGAGa- -3'
miRNA:   3'- -CUAGCGCGA-CUa-Ga-ACC-GGGGCUCgc -5'
6479 5' -57.9 NC_001847.1 + 29409 0.67 0.772387
Target:  5'- --cCGCGCUGGcggCgcggaccgUGGCCCCGcucGCGc -3'
miRNA:   3'- cuaGCGCGACUa--Ga-------ACCGGGGCu--CGC- -5'
6479 5' -57.9 NC_001847.1 + 38148 0.67 0.75344
Target:  5'- -uUCGCGCgGcgCgccGCCCCGAGgGa -3'
miRNA:   3'- cuAGCGCGaCuaGaacCGGGGCUCgC- -5'
6479 5' -57.9 NC_001847.1 + 125547 0.67 0.771451
Target:  5'- cGGUCGUccccgcggcugcgGCUcGAUCgcGGCCgCGGGCGg -3'
miRNA:   3'- -CUAGCG-------------CGA-CUAGaaCCGGgGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 71434 0.67 0.772387
Target:  5'- gGAggGUGCacacgacGAggUUGGCCCCGGGCGc -3'
miRNA:   3'- -CUagCGCGa------CUagAACCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 50069 0.66 0.808713
Target:  5'- -cUgGCGCUGAUCaUUGGCaCCGcGCc -3'
miRNA:   3'- cuAgCGCGACUAG-AACCGgGGCuCGc -5'
6479 5' -57.9 NC_001847.1 + 87239 0.67 0.762972
Target:  5'- -uUCG-GCUGGUaccggcUGcGCCCCGGGCGc -3'
miRNA:   3'- cuAGCgCGACUAga----AC-CGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 31968 0.66 0.79985
Target:  5'- --gCGCGCgGGgcg-GGCCCCGGGgCGc -3'
miRNA:   3'- cuaGCGCGaCUagaaCCGGGGCUC-GC- -5'
6479 5' -57.9 NC_001847.1 + 116373 0.66 0.77983
Target:  5'- -cUCGCGCUGucggccgccgccuuaGccgcggcggcggcgcUCUgGGCCCCGGGCc -3'
miRNA:   3'- cuAGCGCGAC---------------U---------------AGAaCCGGGGCUCGc -5'
6479 5' -57.9 NC_001847.1 + 122349 0.67 0.75344
Target:  5'- --aCGCGCUGAUCguugGGCggCGuGCGg -3'
miRNA:   3'- cuaGCGCGACUAGaa--CCGggGCuCGC- -5'
6479 5' -57.9 NC_001847.1 + 50006 0.68 0.695344
Target:  5'- --cCGCGCgcccaccgccugCUgGGCCCCGGGCGc -3'
miRNA:   3'- cuaGCGCGacua--------GAaCCGGGGCUCGC- -5'
6479 5' -57.9 NC_001847.1 + 32600 0.66 0.790835
Target:  5'- gGAUCGUGCUGcAUCU--GCCUgGAcGCGa -3'
miRNA:   3'- -CUAGCGCGAC-UAGAacCGGGgCU-CGC- -5'
6479 5' -57.9 NC_001847.1 + 78685 0.66 0.781678
Target:  5'- -cUCGCGCca--CUUGGCCagCGAGCa -3'
miRNA:   3'- cuAGCGCGacuaGAACCGGg-GCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.