miRNA display CGI


Results 1 - 20 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 2168 0.66 0.2964
Target:  5'- gGUCUCGCagcGCCCGcGCCgCCUggGCGGCGu -3'
miRNA:   3'- -CGGGGCGgc-UGGGC-CGG-GGG--CGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 107066 0.66 0.290206
Target:  5'- cGCCCC-CCGcCUCaGUCCCCGCuucGGCc -3'
miRNA:   3'- -CGGGGcGGCuGGGcCGGGGGCG---CCGc -5'
6480 5' -70.3 NC_001847.1 + 60444 0.66 0.2964
Target:  5'- cGCgCgCGUCGGCgCuGCCCCCGUcgGGCGc -3'
miRNA:   3'- -CGgG-GCGGCUGgGcCGGGGGCG--CCGC- -5'
6480 5' -70.3 NC_001847.1 + 17866 0.66 0.290206
Target:  5'- aGCgCCGCCGggucGCCC-GUCCUCG-GGCGg -3'
miRNA:   3'- -CGgGGCGGC----UGGGcCGGGGGCgCCGC- -5'
6480 5' -70.3 NC_001847.1 + 132352 0.66 0.290206
Target:  5'- gGCCgCGCucgCGGCCCuggaGGCCgCCgGCGGgGg -3'
miRNA:   3'- -CGGgGCG---GCUGGG----CCGG-GGgCGCCgC- -5'
6480 5' -70.3 NC_001847.1 + 35189 0.66 0.289592
Target:  5'- gGCCUucgaggaggagcgCGCgCGGCUgGGCgCCCUGCGcGCGg -3'
miRNA:   3'- -CGGG-------------GCG-GCUGGgCCG-GGGGCGC-CGC- -5'
6480 5' -70.3 NC_001847.1 + 29560 0.66 0.2964
Target:  5'- cCCCCgcacggacGCCGugCCGGCUgCCGUcuuGCGa -3'
miRNA:   3'- cGGGG--------CGGCugGGCCGGgGGCGc--CGC- -5'
6480 5' -70.3 NC_001847.1 + 1089 0.66 0.2964
Target:  5'- uCCCCGCCugugacucuggaGACgCCGcguGCCCCUGCgacgcuGGCGa -3'
miRNA:   3'- cGGGGCGG------------CUG-GGC---CGGGGGCG------CCGC- -5'
6480 5' -70.3 NC_001847.1 + 59283 0.66 0.292671
Target:  5'- aGCCCCGgcggcgggaaaCCGuACCCagggugccagggcgcGGCgCCgGCGGCGc -3'
miRNA:   3'- -CGGGGC-----------GGC-UGGG---------------CCGgGGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 71846 0.66 0.2964
Target:  5'- cGCgCUGCUGGCCCGGUgcuuCCgCCGCcGCu -3'
miRNA:   3'- -CGgGGCGGCUGGGCCG----GG-GGCGcCGc -5'
6480 5' -70.3 NC_001847.1 + 59717 0.66 0.295776
Target:  5'- cGCgCUCGCCugcagguacguguGGCCCGcgauGCCCgccUCGCGGCGg -3'
miRNA:   3'- -CG-GGGCGG-------------CUGGGC----CGGG---GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 81777 0.66 0.289592
Target:  5'- aGCCCUGCCcgcguaugacgcgGACCUGGUggCCUacgcggagGCGGCGg -3'
miRNA:   3'- -CGGGGCGG-------------CUGGGCCG--GGGg-------CGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 6131 0.66 0.2964
Target:  5'- cGCCUCGCCG-CCaucgggGGgCUCgGUGGCGg -3'
miRNA:   3'- -CGGGGCGGCuGGg-----CCgGGGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 118452 0.66 0.290206
Target:  5'- uGCgCCUGCCGGCUC-GCCCgCGCaGCc -3'
miRNA:   3'- -CG-GGGCGGCUGGGcCGGGgGCGcCGc -5'
6480 5' -70.3 NC_001847.1 + 103825 0.66 0.290206
Target:  5'- cGCUCCaCCaGGCC--GCCgCCCGCGGCGc -3'
miRNA:   3'- -CGGGGcGG-CUGGgcCGG-GGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 12026 0.66 0.289592
Target:  5'- cGCCCCuCUG-CCCGGCggagcgcuggacgCCCUGCGcGCu -3'
miRNA:   3'- -CGGGGcGGCuGGGCCG-------------GGGGCGC-CGc -5'
6480 5' -70.3 NC_001847.1 + 100848 0.66 0.2964
Target:  5'- gGCCaggGCCGgaGCgCCGGCCCgCCGgggguCGGCGg -3'
miRNA:   3'- -CGGgg-CGGC--UG-GGCCGGG-GGC-----GCCGC- -5'
6480 5' -70.3 NC_001847.1 + 16657 0.66 0.2964
Target:  5'- gGCCCCGCgccuacaggCGcGCCCgGGCCUugcgCCGCaGGCa -3'
miRNA:   3'- -CGGGGCG---------GC-UGGG-CCGGG----GGCG-CCGc -5'
6480 5' -70.3 NC_001847.1 + 73147 0.66 0.2964
Target:  5'- gGCCCCGCgCcgcucuucgGGCCCauuauGCCCgCCGCgccGGCGg -3'
miRNA:   3'- -CGGGGCG-G---------CUGGGc----CGGG-GGCG---CCGC- -5'
6480 5' -70.3 NC_001847.1 + 73265 0.66 0.290206
Target:  5'- -gCUCGCCGugCaa-CCCCCGCgGGCGc -3'
miRNA:   3'- cgGGGCGGCugGgccGGGGGCG-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.