miRNA display CGI


Results 1 - 20 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 8 0.66 0.335719
Target:  5'- cGCCgCGCCG-CgCgGGCCCCCuGCGa-- -3'
miRNA:   3'- -CGGgGCGGCuG-GgCCGGGGG-CGCcgc -5'
6480 5' -70.3 NC_001847.1 + 117 0.75 0.067467
Target:  5'- cGCCCCG-CGcCCCGGCCccgCCCGCGGg- -3'
miRNA:   3'- -CGGGGCgGCuGGGCCGG---GGGCGCCgc -5'
6480 5' -70.3 NC_001847.1 + 150 0.73 0.105959
Target:  5'- gGCCCCgGCCGggggGCCgggguucugcgucuUGGCCCCCGgGGCc -3'
miRNA:   3'- -CGGGG-CGGC----UGG--------------GCCGGGGGCgCCGc -5'
6480 5' -70.3 NC_001847.1 + 194 0.71 0.138419
Target:  5'- cCCCCGCC--CCC-GCCCCCGCccccGGCGc -3'
miRNA:   3'- cGGGGCGGcuGGGcCGGGGGCG----CCGC- -5'
6480 5' -70.3 NC_001847.1 + 246 0.71 0.141695
Target:  5'- cGCCCCGaCG-CCCGGCgCCCaGgGGCc -3'
miRNA:   3'- -CGGGGCgGCuGGGCCGgGGG-CgCCGc -5'
6480 5' -70.3 NC_001847.1 + 314 0.66 0.309096
Target:  5'- cGCCCCGCCGGagcUUCGcGCUCCaCGCccGCGu -3'
miRNA:   3'- -CGGGGCGGCU---GGGC-CGGGG-GCGc-CGC- -5'
6480 5' -70.3 NC_001847.1 + 363 0.67 0.272233
Target:  5'- cGCCCCGg-GGCCC-GCCCCgCGCGccGCGc -3'
miRNA:   3'- -CGGGGCggCUGGGcCGGGG-GCGC--CGC- -5'
6480 5' -70.3 NC_001847.1 + 505 0.66 0.309096
Target:  5'- cGCCugCUGCCGGCCC-GCCCCCaGCccacGCu -3'
miRNA:   3'- -CGG--GGCGGCUGGGcCGGGGG-CGc---CGc -5'
6480 5' -70.3 NC_001847.1 + 578 0.73 0.096983
Target:  5'- cGUCUccggCGCCGGguCCUGGCCCuCCGCGGCc -3'
miRNA:   3'- -CGGG----GCGGCU--GGGCCGGG-GGCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 629 0.69 0.191166
Target:  5'- gGCCCgCGCCuccCCCcGCCCCCGaGGCc -3'
miRNA:   3'- -CGGG-GCGGcu-GGGcCGGGGGCgCCGc -5'
6480 5' -70.3 NC_001847.1 + 750 0.75 0.072579
Target:  5'- gGCCCCccuagggcgagGCCGGCCC-GCCgCCgGCGGCGc -3'
miRNA:   3'- -CGGGG-----------CGGCUGGGcCGG-GGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 887 0.71 0.145042
Target:  5'- gGCCCgCGCCGgggccGCCgCGGCCgccggccgccgCCCGCcGGCGc -3'
miRNA:   3'- -CGGG-GCGGC-----UGG-GCCGG-----------GGGCG-CCGC- -5'
6480 5' -70.3 NC_001847.1 + 932 0.71 0.138419
Target:  5'- cCCaCCGCCGcCCuCGGCCCgCGCGcGCc -3'
miRNA:   3'- cGG-GGCGGCuGG-GCCGGGgGCGC-CGc -5'
6480 5' -70.3 NC_001847.1 + 951 0.71 0.144704
Target:  5'- cGCCCggggacgacugCGCCGgcACCCGGgCCggcggggcuuccgCCGCGGCGg -3'
miRNA:   3'- -CGGG-----------GCGGC--UGGGCCgGG-------------GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 1012 0.66 0.290206
Target:  5'- cGCUCCaCCaGGCC--GCCgCCCGCGGCGc -3'
miRNA:   3'- -CGGGGcGG-CUGGgcCGG-GGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 1089 0.66 0.2964
Target:  5'- uCCCCGCCugugacucuggaGACgCCGcguGCCCCUGCgacgcuGGCGa -3'
miRNA:   3'- cGGGGCGG------------CUG-GGC---CGGGGGCG------CCGC- -5'
6480 5' -70.3 NC_001847.1 + 1098 0.68 0.213454
Target:  5'- cGCCgCgGCCGcgggcggcgccGCCgCGGCCUCCagcaccaGCGGCGg -3'
miRNA:   3'- -CGG-GgCGGC-----------UGG-GCCGGGGG-------CGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 1185 0.66 0.328909
Target:  5'- gGCCaCCGCCGcGgCCGGCagCUCGUcgGGCGc -3'
miRNA:   3'- -CGG-GGCGGC-UgGGCCGg-GGGCG--CCGC- -5'
6480 5' -70.3 NC_001847.1 + 1372 0.67 0.278122
Target:  5'- cGCCCgucgagCGCCGGCagcacgcgcugCCGGUaCUCgCGCGGCGg -3'
miRNA:   3'- -CGGG------GCGGCUG-----------GGCCG-GGG-GCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 1495 0.66 0.321537
Target:  5'- cGCCCaauuauuUGCCuuGGCCCGuuguguucCCCCCGCGcGCGc -3'
miRNA:   3'- -CGGG-------GCGG--CUGGGCc-------GGGGGCGC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.