miRNA display CGI


Results 1 - 20 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 34062 1.09 0.000172
Target:  5'- cGCCCCGCCGACCCGGCCCCCGCGGCGg -3'
miRNA:   3'- -CGGGGCGGCUGGGCCGGGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 95753 0.85 0.011857
Target:  5'- aGCCCgGCCGGCgCCGGCuCCCCGaCGGCGu -3'
miRNA:   3'- -CGGGgCGGCUG-GGCCG-GGGGC-GCCGC- -5'
6480 5' -70.3 NC_001847.1 + 46597 0.85 0.012159
Target:  5'- aGCCCCGCCGGCgCGG-CCUCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCUGgGCCgGGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 2352 0.84 0.016426
Target:  5'- cGCCgCGCCGGCCCGGCCgcgUCgGCGGCGg -3'
miRNA:   3'- -CGGgGCGGCUGGGCCGG---GGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 105165 0.84 0.016426
Target:  5'- cGCCgCGCCGGCCCGGCCgcgUCgGCGGCGg -3'
miRNA:   3'- -CGGgGCGGCUGGGCCGG---GGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 31364 0.83 0.017885
Target:  5'- aGCCCCGCCGGCCCGGgugccggcgcagucgUCCCCG-GGCGc -3'
miRNA:   3'- -CGGGGCGGCUGGGCC---------------GGGGGCgCCGC- -5'
6480 5' -70.3 NC_001847.1 + 134177 0.83 0.017885
Target:  5'- aGCCCCGCCGGCCCGGgugccggcgcagucgUCCCCG-GGCGc -3'
miRNA:   3'- -CGGGGCGGCUGGGCC---------------GGGGGCgCCGC- -5'
6480 5' -70.3 NC_001847.1 + 66345 0.83 0.01957
Target:  5'- cCCCCGUCGGCCCgcucgcgcGGCCgCCGCGGCGa -3'
miRNA:   3'- cGGGGCGGCUGGG--------CCGGgGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 79773 0.81 0.023899
Target:  5'- uCCUCGCCGACcgucuCCGGCgCCCGCGGCGc -3'
miRNA:   3'- cGGGGCGGCUG-----GGCCGgGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 107972 0.8 0.029904
Target:  5'- aCCCCGCCGACauuauugggCUGGCCgCCGCGGCu -3'
miRNA:   3'- cGGGGCGGCUG---------GGCCGGgGGCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 131123 0.8 0.03135
Target:  5'- gGCCCCgcgagaggcgggcGCCgGGCCCGGCgCCCCGCGGgGc -3'
miRNA:   3'- -CGGGG-------------CGG-CUGGGCCG-GGGGCGCCgC- -5'
6480 5' -70.3 NC_001847.1 + 28310 0.8 0.03135
Target:  5'- gGCCCCgcgagaggcgggcGCCgGGCCCGGCgCCCCGCGGgGc -3'
miRNA:   3'- -CGGGG-------------CGG-CUGGGCCG-GGGGCGCCgC- -5'
6480 5' -70.3 NC_001847.1 + 41864 0.8 0.033359
Target:  5'- cGCgCCGCCGACaucgcggcgcgauaCGGCCCgCGCGGCGa -3'
miRNA:   3'- -CGgGGCGGCUGg-------------GCCGGGgGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 32473 0.79 0.033859
Target:  5'- cGCCCCGCCc-CCCcGCCCUCGCGGCc -3'
miRNA:   3'- -CGGGGCGGcuGGGcCGGGGGCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 78327 0.79 0.03471
Target:  5'- cGCgCCGCgGGCCCGGCUUgggcgCCGCGGCGg -3'
miRNA:   3'- -CGgGGCGgCUGGGCCGGG-----GGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 92412 0.79 0.037389
Target:  5'- cGCCCCGCCGcccGCgCGGCCgCCCGCcGCGc -3'
miRNA:   3'- -CGGGGCGGC---UGgGCCGG-GGGCGcCGC- -5'
6480 5' -70.3 NC_001847.1 + 132783 0.79 0.039287
Target:  5'- cGCCgCCGCCGACgCGGCCgggCCggCGCGGCGg -3'
miRNA:   3'- -CGG-GGCGGCUGgGCCGG---GG--GCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 29970 0.79 0.039287
Target:  5'- cGCCgCCGCCGACgCGGCCgggCCggCGCGGCGg -3'
miRNA:   3'- -CGG-GGCGGCUGgGCCGG---GG--GCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 15983 0.78 0.040272
Target:  5'- uGCCCCGCCGcCCCgcGGCggCCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCuGGG--CCGggGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 16043 0.78 0.040272
Target:  5'- uGCCCCGCCGcCCCgcGGCggCCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCuGGG--CCGggGGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.