miRNA display CGI


Results 1 - 20 of 902 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6480 5' -70.3 NC_001847.1 + 12085 0.76 0.05971
Target:  5'- aGCgCCGCgGGUCCGGCgCCCGCGGCc -3'
miRNA:   3'- -CGgGGCGgCUGGGCCGgGGGCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 29913 0.77 0.049062
Target:  5'- uGCgCCCGCCuguGCCCGcGCgCCCGCGGUGg -3'
miRNA:   3'- -CG-GGGCGGc--UGGGC-CGgGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 48385 0.77 0.050284
Target:  5'- gGCgCCGCCgGGCCgGGCCUCgGCGGCa -3'
miRNA:   3'- -CGgGGCGG-CUGGgCCGGGGgCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 46910 0.77 0.051536
Target:  5'- cGCCgCGCCGGCCuCGGCUCCgGCgaGGCGc -3'
miRNA:   3'- -CGGgGCGGCUGG-GCCGGGGgCG--CCGC- -5'
6480 5' -70.3 NC_001847.1 + 105565 0.77 0.052819
Target:  5'- gGCCCggcgcggcggCGCCGGCgCCGgcGCCCCCGCcGGCGg -3'
miRNA:   3'- -CGGG----------GCGGCUG-GGC--CGGGGGCG-CCGC- -5'
6480 5' -70.3 NC_001847.1 + 15924 0.77 0.054132
Target:  5'- uGCCCCGCCGcCCCgcGGUggCCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCuGGG--CCGggGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 102215 0.77 0.054132
Target:  5'- gGCCCCGCCG--CCGGCCUcgcucccguCCGCGGCc -3'
miRNA:   3'- -CGGGGCGGCugGGCCGGG---------GGCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 11655 0.77 0.055477
Target:  5'- gGCCCCGCuugcggCGGCCCcaGCCgagCCCGCGGCGg -3'
miRNA:   3'- -CGGGGCG------GCUGGGc-CGG---GGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 96719 0.76 0.058265
Target:  5'- cGCCCCuCgGGCuCCcGCCCCUGCGGCGa -3'
miRNA:   3'- -CGGGGcGgCUG-GGcCGGGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 113369 0.77 0.048941
Target:  5'- cGCCCgGCCGgcgccggGCCCGGCgCCgGCGGCc -3'
miRNA:   3'- -CGGGgCGGC-------UGGGCCGgGGgCGCCGc -5'
6480 5' -70.3 NC_001847.1 + 122208 0.77 0.047868
Target:  5'- cGCCCCaCCGcacgacgacACgCGcGCCCCCGCGGCGg -3'
miRNA:   3'- -CGGGGcGGC---------UGgGC-CGGGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 76560 0.78 0.043051
Target:  5'- uGCCCacgcaGCCGgcgGCCCGGCCCCCGaucuucgccgccgcUGGCGg -3'
miRNA:   3'- -CGGGg----CGGC---UGGGCCGGGGGC--------------GCCGC- -5'
6480 5' -70.3 NC_001847.1 + 46597 0.85 0.012159
Target:  5'- aGCCCCGCCGGCgCGG-CCUCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCUGgGCCgGGGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 105165 0.84 0.016426
Target:  5'- cGCCgCGCCGGCCCGGCCgcgUCgGCGGCGg -3'
miRNA:   3'- -CGGgGCGGCUGGGCCGG---GGgCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 134177 0.83 0.017885
Target:  5'- aGCCCCGCCGGCCCGGgugccggcgcagucgUCCCCG-GGCGc -3'
miRNA:   3'- -CGGGGCGGCUGGGCC---------------GGGGGCgCCGC- -5'
6480 5' -70.3 NC_001847.1 + 131123 0.8 0.03135
Target:  5'- gGCCCCgcgagaggcgggcGCCgGGCCCGGCgCCCCGCGGgGc -3'
miRNA:   3'- -CGGGG-------------CGG-CUGGGCCG-GGGGCGCCgC- -5'
6480 5' -70.3 NC_001847.1 + 92412 0.79 0.037389
Target:  5'- cGCCCCGCCGcccGCgCGGCCgCCCGCcGCGc -3'
miRNA:   3'- -CGGGGCGGC---UGgGCCGG-GGGCGcCGC- -5'
6480 5' -70.3 NC_001847.1 + 132783 0.79 0.039287
Target:  5'- cGCCgCCGCCGACgCGGCCgggCCggCGCGGCGg -3'
miRNA:   3'- -CGG-GGCGGCUGgGCCGG---GG--GCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 15983 0.78 0.040272
Target:  5'- uGCCCCGCCGcCCCgcGGCggCCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCuGGG--CCGggGGCGCCGC- -5'
6480 5' -70.3 NC_001847.1 + 16043 0.78 0.040272
Target:  5'- uGCCCCGCCGcCCCgcGGCggCCGCGGCGc -3'
miRNA:   3'- -CGGGGCGGCuGGG--CCGggGGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.