Results 41 - 60 of 969 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6481 | 5' | -64.2 | NC_001847.1 | + | 53621 | 0.8 | 0.071427 |
Target: 5'- -gCGGCGGGGUGGCaCCGCCCgaGCUGCa -3' miRNA: 3'- ggGUCGUCCUACCGcGGCGGG--CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 24321 | 0.82 | 0.045006 |
Target: 5'- gCCCAGCgAGcGGUGGCG-CGCCaCGCCGCg -3' miRNA: 3'- -GGGUCG-UC-CUACCGCgGCGG-GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 124537 | 0.83 | 0.042739 |
Target: 5'- gCCAGCAGGGcgcgggccGGCGCCgGCCCGCgCGCg -3' miRNA: 3'- gGGUCGUCCUa-------CCGCGG-CGGGCG-GCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 29432 | 0.84 | 0.034737 |
Target: 5'- gCCAGCgagcgcugGGGcGUGGCGCCGCCCGCgGCc -3' miRNA: 3'- gGGUCG--------UCC-UACCGCGGCGGGCGgCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 132377 | 0.84 | 0.032978 |
Target: 5'- gCCGGCGGGGgcgccGGCGCCgGCgCCGCCGCg -3' miRNA: 3'- gGGUCGUCCUa----CCGCGG-CG-GGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 95317 | 0.78 | 0.096759 |
Target: 5'- gCCAcGCAGGAa-GCGCUcggGCCCGCCGCg -3' miRNA: 3'- gGGU-CGUCCUacCGCGG---CGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 23901 | 0.78 | 0.096759 |
Target: 5'- -gCGGCAGGuucgGGCGCagcaGCUCGCCGCu -3' miRNA: 3'- ggGUCGUCCua--CCGCGg---CGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 33875 | 0.76 | 0.12111 |
Target: 5'- uUCUuGCAGGA-GGCGCCGCCgcgcgugGCCGCg -3' miRNA: 3'- -GGGuCGUCCUaCCGCGGCGGg------CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 132177 | 0.77 | 0.115248 |
Target: 5'- cCCCGGCGGcGcUGcGCGCCGaggcggCCGCCGCg -3' miRNA: 3'- -GGGUCGUC-CuAC-CGCGGCg-----GGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 105255 | 0.77 | 0.115248 |
Target: 5'- gCCGGCAGGGc--CGCCGCCuCGCCGUc -3' miRNA: 3'- gGGUCGUCCUaccGCGGCGG-GCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 13118 | 0.77 | 0.112418 |
Target: 5'- gCCGgggcgcGCGGGcgGcgccGCGCCGCCUGCCGCg -3' miRNA: 3'- gGGU------CGUCCuaC----CGCGGCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 112625 | 0.77 | 0.112418 |
Target: 5'- uCCCGGCAGaccGGC-CCgGCCCGCCGCc -3' miRNA: 3'- -GGGUCGUCcuaCCGcGG-CGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 45260 | 0.77 | 0.109652 |
Target: 5'- gCCGGCGuGAgcgcGGCGaaGCCCGCCGCg -3' miRNA: 3'- gGGUCGUcCUa---CCGCggCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 93467 | 0.77 | 0.108564 |
Target: 5'- cCCCAGCAGGAUcuccuugaagaGCCGCgUGCCGCg -3' miRNA: 3'- -GGGUCGUCCUAccg--------CGGCGgGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 106758 | 0.77 | 0.106951 |
Target: 5'- gCCgCGGCGGGGggGGCGCCGUcuCCGgCGCg -3' miRNA: 3'- -GG-GUCGUCCUa-CCGCGGCG--GGCgGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 55510 | 0.77 | 0.104312 |
Target: 5'- gCCCuGCugc-UGGCGgCGCCCGCCGCg -3' miRNA: 3'- -GGGuCGuccuACCGCgGCGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 55459 | 0.77 | 0.101734 |
Target: 5'- gCCGGCGGGgcGcGCGCCGCgCUaGCCGCu -3' miRNA: 3'- gGGUCGUCCuaC-CGCGGCG-GG-CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 2467 | 0.78 | 0.099217 |
Target: 5'- aUCgAGCGGGcggcGGCGCC-CCCGCCGCc -3' miRNA: 3'- -GGgUCGUCCua--CCGCGGcGGGCGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 31970 | 0.78 | 0.099217 |
Target: 5'- -gCGGCGGGccccGUGGaCGCCGCCCucgaGCCGCg -3' miRNA: 3'- ggGUCGUCC----UACC-GCGGCGGG----CGGCG- -5' |
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6481 | 5' | -64.2 | NC_001847.1 | + | 134574 | 0.78 | 0.096759 |
Target: 5'- aCCCGGCGccGGAgacgcGGCGCuggCGUCCGCCGCc -3' miRNA: 3'- -GGGUCGU--CCUa----CCGCG---GCGGGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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