miRNA display CGI


Results 41 - 60 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 29520 0.74 0.116883
Target:  5'- -cGGcCGCAGaGcucGCCCGCGCGGCGCg -3'
miRNA:   3'- ccCCaGCGUC-Ccc-CGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 121191 0.74 0.114089
Target:  5'- cGGGagcggcacuugCGCGGGGcGGCCCcccugcCGCGGCGCg -3'
miRNA:   3'- cCCCa----------GCGUCCC-CCGGGc-----GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 33786 0.74 0.111357
Target:  5'- aGGGcuUCGC--GGGGCUgCGCGCGGCGCc -3'
miRNA:   3'- cCCC--AGCGucCCCCGG-GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 12190 0.74 0.108687
Target:  5'- aGGGGuugaggaugUCGUAGGugcgcuucuGGCuuGCGCGGCGCg -3'
miRNA:   3'- -CCCC---------AGCGUCCc--------CCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 116443 0.74 0.111357
Target:  5'- aGGG-CGguGGGcgcuGGCgCaCGCGCGGCGCg -3'
miRNA:   3'- cCCCaGCguCCC----CCG-G-GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 53718 0.74 0.122664
Target:  5'- cGGcGGcUCGCGGGGcGGaucggCGCGCGGCGUa -3'
miRNA:   3'- -CC-CC-AGCGUCCC-CCgg---GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 62905 0.74 0.122664
Target:  5'- cGGGUggCGCGGgugcucGGGGCCCGCG-GGCGg -3'
miRNA:   3'- cCCCA--GCGUC------CCCCGGGCGCgCCGCg -5'
6482 5' -67.7 NC_001847.1 + 78300 0.74 0.125652
Target:  5'- cGGG-CGCAGacGGCgCgGCGCGGCGCg -3'
miRNA:   3'- cCCCaGCGUCccCCG-GgCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 11895 0.74 0.119741
Target:  5'- -uGGU-GCGGccGGGGUCCGCGCuGGCGCg -3'
miRNA:   3'- ccCCAgCGUC--CCCCGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 74387 0.74 0.125652
Target:  5'- -aGG-CGCuGGGGGaCCGCGCGGcCGCc -3'
miRNA:   3'- ccCCaGCGuCCCCCgGGCGCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 27422 0.73 0.138294
Target:  5'- aGGGUUGUAgccccGGGGuGCCCGCccGCGaGCGCc -3'
miRNA:   3'- cCCCAGCGU-----CCCC-CGGGCG--CGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 124570 0.73 0.135028
Target:  5'- ----gCGCGGGGGGgCCGC-CGGCGCc -3'
miRNA:   3'- ccccaGCGUCCCCCgGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 266 0.73 0.141295
Target:  5'- aGGGGcccgaGCccGGGGGccgccgaGCCCGCGCgGGCGCc -3'
miRNA:   3'- -CCCCag---CG--UCCCC-------CGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 54916 0.73 0.128709
Target:  5'- cGGGaGcUCGCGGGGGucuugagcGCCCugcgcuuCGCGGCGCa -3'
miRNA:   3'- -CCC-C-AGCGUCCCC--------CGGGc------GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 6962 0.73 0.128709
Target:  5'- cGGGGUCGCGGcGGcgcuuccGCCCGCG-GGcCGCc -3'
miRNA:   3'- -CCCCAGCGUC-CCc------CGGGCGCgCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 103079 0.73 0.141295
Target:  5'- aGGGGcccgaGCccGGGGGccgccgaGCCCGCGCgGGCGCc -3'
miRNA:   3'- -CCCCag---CG--UCCCC-------CGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 102854 0.73 0.131833
Target:  5'- cGGcGUCGCGGGGccgcGCCaCGCGgaCGGCGCg -3'
miRNA:   3'- cCC-CAGCGUCCCc---CGG-GCGC--GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 95762 0.73 0.130889
Target:  5'- gGGGGgcggCGCGggccgcucuggcgcGGGGGgCgGCGCGGgCGCa -3'
miRNA:   3'- -CCCCa---GCGU--------------CCCCCgGgCGCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 12553 0.73 0.128709
Target:  5'- cGGGaCGCAGGugcgcaacGGGCgCCGCguacGCGGCGCc -3'
miRNA:   3'- cCCCaGCGUCC--------CCCG-GGCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 31580 0.73 0.127785
Target:  5'- cGGGccggccUCGCccuaGGGGGGCCCGCgggaagggagggagGgGGCGCg -3'
miRNA:   3'- cCCC------AGCG----UCCCCCGGGCG--------------CgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.