Results 41 - 60 of 559 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6483 | 5' | -67.8 | NC_001847.1 | + | 76397 | 0.74 | 0.109615 |
Target: 5'- uCGCgGCCGCcgCCGCUgUCGGgCCGCCGg -3' miRNA: 3'- -GUGaCGGCG--GGCGAgGGCCgGGCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 102231 | 0.74 | 0.099372 |
Target: 5'- uCGCUcCCGUCCGCggcCCCGGCuuccCCGCCGg -3' miRNA: 3'- -GUGAcGGCGGGCGa--GGGCCG----GGCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 93763 | 0.74 | 0.109615 |
Target: 5'- gGCUGCCGgCgGCggCCCGGCC-GCCGc -3' miRNA: 3'- gUGACGGCgGgCGa-GGGCCGGgCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 115879 | 0.74 | 0.104375 |
Target: 5'- uCGC-GCCGCCgGCcagaaCCGGUCCGCCGg -3' miRNA: 3'- -GUGaCGGCGGgCGag---GGCCGGGCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 120453 | 0.73 | 0.12351 |
Target: 5'- aGCUG-CGCCUGCUCcaucgccgcgccgCCGGCCgCGCCGu -3' miRNA: 3'- gUGACgGCGGGCGAG-------------GGCCGG-GCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 59809 | 0.73 | 0.126846 |
Target: 5'- cCACUGCCGCCCGC-CCgGGagCGCgGu -3' miRNA: 3'- -GUGACGGCGGGCGaGGgCCggGCGgC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 30010 | 0.73 | 0.129952 |
Target: 5'- cCGCUGcCCGCCCGCgugcuggggCCCaugccgcccggcGGCCCcGCCGc -3' miRNA: 3'- -GUGAC-GGCGGGCGa--------GGG------------CCGGG-CGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 10229 | 0.73 | 0.126846 |
Target: 5'- cCGCUGUCGCCCccggcGCgccugCCgGGCCCGCUu -3' miRNA: 3'- -GUGACGGCGGG-----CGa----GGgCCGGGCGGc -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 31899 | 0.73 | 0.12084 |
Target: 5'- uGCUGCCGCCgccgcCGCcgCCC-GCCCGCCc -3' miRNA: 3'- gUGACGGCGG-----GCGa-GGGcCGGGCGGc -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 76 | 0.73 | 0.126846 |
Target: 5'- gGCggGCCcggGCCCGCUCUgGGCuCCGCCc -3' miRNA: 3'- gUGa-CGG---CGGGCGAGGgCCG-GGCGGc -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 99001 | 0.73 | 0.126846 |
Target: 5'- cCGCUGCagGCCCGCgUCCgCGGCgCGCgCGg -3' miRNA: 3'- -GUGACGg-CGGGCG-AGG-GCCGgGCG-GC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 113042 | 0.73 | 0.126846 |
Target: 5'- cCGCUGUCGCCCccggcGCgccugCCgGGCCCGCUu -3' miRNA: 3'- -GUGACGGCGGG-----CGa----GGgCCGGGCGGc -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 122530 | 0.73 | 0.126846 |
Target: 5'- gCAgUGCCGCCCGgaCCCuGCCgGUCGc -3' miRNA: 3'- -GUgACGGCGGGCgaGGGcCGGgCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 76921 | 0.73 | 0.126846 |
Target: 5'- cCGCUGCCGCCCgGCgggcagauccgCCCGgagcGCCUGCUGg -3' miRNA: 3'- -GUGACGGCGGG-CGa----------GGGC----CGGGCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 102889 | 0.73 | 0.126846 |
Target: 5'- gGCggGCCcggGCCCGCUCUgGGCuCCGCCc -3' miRNA: 3'- gUGa-CGG---CGGGCGAGGgCCG-GGCGGc -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 39491 | 0.73 | 0.129638 |
Target: 5'- cCAgaGCgGCCCGCgccgCCCcccgcgccagagcGGCCCGCCa -3' miRNA: 3'- -GUgaCGgCGGGCGa---GGG-------------CCGGGCGGc -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 109144 | 0.73 | 0.12084 |
Target: 5'- uUugUGCgCGCCUGCgcgCCCGcccGCCCGCCc -3' miRNA: 3'- -GugACG-GCGGGCGa--GGGC---CGGGCGGc -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 52073 | 0.73 | 0.12381 |
Target: 5'- gGCUGCCGUguugCGCUCuUCGGCCgCGCCGc -3' miRNA: 3'- gUGACGGCGg---GCGAG-GGCCGG-GCGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 131602 | 0.73 | 0.12084 |
Target: 5'- aCGCcGCCGCCgCGCUCgCGGCCguaGUCGg -3' miRNA: 3'- -GUGaCGGCGG-GCGAGgGCCGGg--CGGC- -5' |
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6483 | 5' | -67.8 | NC_001847.1 | + | 6331 | 0.73 | 0.12084 |
Target: 5'- uUugUGCgCGCCUGCgcgCCCGcccGCCCGCCc -3' miRNA: 3'- -GugACG-GCGGGCGa--GGGC---CGGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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