miRNA display CGI


Results 41 - 60 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 130180 0.69 0.288148
Target:  5'- aCCCCGCgGGCgcccgGCCugaagagacggGCGGCGcGGAGGGc -3'
miRNA:   3'- -GGGGCGgCCGg----CGG-----------CGCCGC-UCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 129929 1.08 0.000449
Target:  5'- gCCCCGCCGGCCGCCGCGGCGAGAGAGc -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 129673 0.67 0.410129
Target:  5'- -gCCGCU-GCCGCCGCcGC-AGAGAGc -3'
miRNA:   3'- ggGGCGGcCGGCGGCGcCGcUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 129588 0.69 0.286274
Target:  5'- aCCUGCCGcugccgcugcugccGCCGCCGCcgguGCGAGgaaGGAGg -3'
miRNA:   3'- gGGGCGGC--------------CGGCGGCGc---CGCUC---UCUC- -5'
6484 3' -66.3 NC_001847.1 + 128466 0.79 0.062749
Target:  5'- gCCCgGCCGGCCGCCGCGGCc------ -3'
miRNA:   3'- -GGGgCGGCCGGCGGCGCCGcucucuc -5'
6484 3' -66.3 NC_001847.1 + 128164 0.68 0.348174
Target:  5'- aCCCaCGCCGGCaaGCUgauggcaggggGCGGCGgcagggcGGAGGGg -3'
miRNA:   3'- -GGG-GCGGCCGg-CGG-----------CGCCGC-------UCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 127341 0.75 0.11645
Target:  5'- -gCgGCCGGCUGCCGCGGC-AGGGGc -3'
miRNA:   3'- ggGgCGGCCGGCGGCGCCGcUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 127194 0.71 0.22
Target:  5'- aCCCGCauggcgcgaacucCGGCgCGgCGCGcGCGGGAGGGu -3'
miRNA:   3'- gGGGCG-------------GCCG-GCgGCGC-CGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 126536 0.69 0.294467
Target:  5'- cCCCCGCCcccGGCCgagcGCCGCcccuGGCGGGGc-- -3'
miRNA:   3'- -GGGGCGG---CCGG----CGGCG----CCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 125501 0.66 0.434753
Target:  5'- gCCCgGCUgcucgagcggcgGGCCGgCGCGGCGGcGGGc -3'
miRNA:   3'- -GGGgCGG------------CCGGCgGCGCCGCUcUCUc -5'
6484 3' -66.3 NC_001847.1 + 125412 0.66 0.477615
Target:  5'- gCCCGcCCGGUCG-CGUGGCaAGcGAGu -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGcUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 125090 0.73 0.174921
Target:  5'- gCCCGCgCGGCCaagaugucguucGCgGCGGCGAGAa-- -3'
miRNA:   3'- gGGGCG-GCCGG------------CGgCGCCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 125051 0.72 0.187637
Target:  5'- uCCCCGCCGcuugugcucCCGCgCGCGGCGGGGc-- -3'
miRNA:   3'- -GGGGCGGCc--------GGCG-GCGCCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 124552 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 123570 0.66 0.468872
Target:  5'- ---gGCCggGGCCGCCGCGaGCGGGGc-- -3'
miRNA:   3'- ggggCGG--CCGGCGGCGC-CGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 123464 0.69 0.300893
Target:  5'- gCCCgGCgaCGGCCGCCGCGGgcuCGGcuGGGg -3'
miRNA:   3'- -GGGgCG--GCCGGCGGCGCC---GCUcuCUC- -5'
6484 3' -66.3 NC_001847.1 + 122544 0.7 0.269833
Target:  5'- aCCCUGCCGGUCgcugGCCGCacgaguGCGAGGGc- -3'
miRNA:   3'- -GGGGCGGCCGG----CGGCGc-----CGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 122509 0.66 0.472359
Target:  5'- cCCCCGCa-GCCGCaGCGGCcgccuccauguugagGAGcGGGGg -3'
miRNA:   3'- -GGGGCGgcCGGCGgCGCCG---------------CUC-UCUC- -5'
6484 3' -66.3 NC_001847.1 + 122138 0.66 0.460211
Target:  5'- -aCgGCCGGCgcgcagggCGCCGCG-CGGGAcGAGg -3'
miRNA:   3'- ggGgCGGCCG--------GCGGCGCcGCUCU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 122004 0.71 0.230756
Target:  5'- -aCCGCCGGCCGCgGCaGGCGGc---- -3'
miRNA:   3'- ggGGCGGCCGGCGgCG-CCGCUcucuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.