miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 133388 0.71 0.778133
Target:  5'- -cCUUCCGCGgCGCGGUGGAGu---- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCAUUUUguuuu -5'
6484 5' -52.6 NC_001847.1 + 132412 0.71 0.737888
Target:  5'- -gCUCCCGCccugcgcuCCGUGGUGGGGCAGGu -3'
miRNA:   3'- aaGAGGGCGc-------GGCGCCAUUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 132128 0.72 0.717108
Target:  5'- cUCggcgcggCCCGCGaCGCGGUGGAGCGc-- -3'
miRNA:   3'- aAGa------GGGCGCgGCGCCAUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 131748 0.66 0.956493
Target:  5'- cUCUCCCGCuGCUuGCGG-AGGGCu--- -3'
miRNA:   3'- aAGAGGGCG-CGG-CGCCaUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 129966 1.04 0.00884
Target:  5'- cUUCUCCCGCGCCGCGGUAAAACAAAAa -3'
miRNA:   3'- -AAGAGGGCGCGGCGCCAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 125065 0.69 0.842586
Target:  5'- -gCUCCCGCG-CGCGGcGGGGCGc-- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCaUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 124562 0.66 0.956493
Target:  5'- ---gCCCGCGCgCGCGGggGGGCc--- -3'
miRNA:   3'- aagaGGGCGCG-GCGCCauUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 124282 0.78 0.380985
Target:  5'- -cCUCCCGCcCCGCGGgcGAAUAAAAc -3'
miRNA:   3'- aaGAGGGCGcGGCGCCauUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 121749 0.66 0.947984
Target:  5'- uUUCUCCCGgGcCCGCGGcgcgcccGGACGu-- -3'
miRNA:   3'- -AAGAGGGCgC-GGCGCCau-----UUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 118839 0.75 0.525131
Target:  5'- ---aCCCGCGCCGCGGgu-GACGGu- -3'
miRNA:   3'- aagaGGGCGCGGCGCCauuUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 116888 0.66 0.960369
Target:  5'- ----gCCGCGCCGCGGUc--GCGGc- -3'
miRNA:   3'- aagagGGCGCGGCGCCAuuuUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 116475 0.66 0.960369
Target:  5'- gUUCUgCUCaGCGUCGCGGgcGGGCAc-- -3'
miRNA:   3'- -AAGA-GGG-CGCGGCGCCauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 116438 0.66 0.943344
Target:  5'- -gCUCCCcgcgGCGCUGgCGGUGAcGCGGGc -3'
miRNA:   3'- aaGAGGG----CGCGGC-GCCAUUuUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 116271 0.66 0.943344
Target:  5'- -aCUCUgGCGCCGCucGGcGAGGCAGc- -3'
miRNA:   3'- aaGAGGgCGCGGCG--CCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 116235 0.67 0.921562
Target:  5'- -gCUCCCGCGCaggagcaCGUGGUGcu-CAAGAu -3'
miRNA:   3'- aaGAGGGCGCG-------GCGCCAUuuuGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 115733 0.66 0.949768
Target:  5'- -gCUCCCGCuuugccugcugcgucGCCGCGGagccGACGGGGa -3'
miRNA:   3'- aaGAGGGCG---------------CGGCGCCauu-UUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 113854 0.66 0.947984
Target:  5'- gUC-CCCGUggauGCCGCGGUccgcuACAAAGa -3'
miRNA:   3'- aAGaGGGCG----CGGCGCCAuuu--UGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 111068 0.66 0.956493
Target:  5'- -cCUCUCGCuGCCGCGGgccuGGGCc--- -3'
miRNA:   3'- aaGAGGGCG-CGGCGCCau--UUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 105611 0.69 0.859224
Target:  5'- cUCgagcgCCCGCGCCGCGc--GGGCGAGc -3'
miRNA:   3'- aAGa----GGGCGCGGCGCcauUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 105432 0.7 0.825097
Target:  5'- -gCUCCCGCGCCGCaGUcucgcgcccAAGCGAu- -3'
miRNA:   3'- aaGAGGGCGCGGCGcCAu--------UUUGUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.