miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 104573 0.7 0.825097
Target:  5'- -aCUCcaCCGCGCCGCGG-AAGGCc--- -3'
miRNA:   3'- aaGAG--GGCGCGGCGCCaUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 103854 0.69 0.862444
Target:  5'- cUC-CCCGCGCCcgccuggucggugauGCGGUuuGGCAGGu -3'
miRNA:   3'- aAGaGGGCGCGG---------------CGCCAuuUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 103332 0.67 0.930048
Target:  5'- cUCUgccCCCGCGCCGCccaccgccacggccGUAAGGCAGGc -3'
miRNA:   3'- aAGA---GGGCGCGGCGc-------------CAUUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 102024 0.69 0.867205
Target:  5'- -gCUCgCCGcCGCCGCGGUcgGcCAGGAu -3'
miRNA:   3'- aaGAG-GGC-GCGGCGCCAuuUuGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 101204 0.66 0.960369
Target:  5'- gUUCUCCaGCGCCucGCGGUAccGGcCGAAGa -3'
miRNA:   3'- -AAGAGGgCGCGG--CGCCAU--UUuGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 99690 0.7 0.787858
Target:  5'- -cCUCUCGCGCCGCGGcc--GCGu-- -3'
miRNA:   3'- aaGAGGGCGCGGCGCCauuuUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 97335 0.66 0.960369
Target:  5'- gUCgcgCCCGCccgGCCGCGuGUcAAACAGc- -3'
miRNA:   3'- aAGa--GGGCG---CGGCGC-CAuUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 94239 0.66 0.956493
Target:  5'- ---gCCCGCGCgGCGccGUGGAGCGGc- -3'
miRNA:   3'- aagaGGGCGCGgCGC--CAUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 93147 0.66 0.956493
Target:  5'- cUUCgUUCCGCGCCGacgcagcgcuCGGcGAGACAGAc -3'
miRNA:   3'- -AAG-AGGGCGCGGC----------GCCaUUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 90255 0.67 0.927844
Target:  5'- --gUCCCGCaGCaCGUGGU-AGGCGAAAa -3'
miRNA:   3'- aagAGGGCG-CG-GCGCCAuUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 89283 0.69 0.87495
Target:  5'- gUUUCgCGCGCCGCGGccGAGGCc--- -3'
miRNA:   3'- aAGAGgGCGCGGCGCCa-UUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 88390 0.69 0.833943
Target:  5'- ---cCCCGCGCgGCGGgcGGGCGc-- -3'
miRNA:   3'- aagaGGGCGCGgCGCCauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 87698 0.66 0.956493
Target:  5'- -gCUgCgGCGCCGCGGcgGcgGCGAAGc -3'
miRNA:   3'- aaGAgGgCGCGGCGCCa-UuuUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 87188 0.69 0.867205
Target:  5'- -cCUCCaCGCGCUGCuGG-AGAACAAc- -3'
miRNA:   3'- aaGAGG-GCGCGGCG-CCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 86726 0.67 0.938441
Target:  5'- -aCUCCaCGCGgcCCGCGG-AGGGCGAu- -3'
miRNA:   3'- aaGAGG-GCGC--GGCGCCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 85636 0.66 0.956493
Target:  5'- ---cCCCGCGCC-CGGcGAAGCGGc- -3'
miRNA:   3'- aagaGGGCGCGGcGCCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 84552 0.69 0.87495
Target:  5'- ---gCCCGCGUCGCagcgcuccaGGUAGAACAGc- -3'
miRNA:   3'- aagaGGGCGCGGCG---------CCAUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 83532 0.66 0.956493
Target:  5'- --gUCCgUGCGCCGCcccggGGUGGAGCAc-- -3'
miRNA:   3'- aagAGG-GCGCGGCG-----CCAUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 82849 0.66 0.960369
Target:  5'- ---gCCCGCGcCCGCGGUcgcgcacACAAAGc -3'
miRNA:   3'- aagaGGGCGC-GGCGCCAuuu----UGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 80009 0.69 0.87495
Target:  5'- ---cCCCGCGCCcgcGCGGaugcGAAGCAAAAa -3'
miRNA:   3'- aagaGGGCGCGG---CGCCa---UUUUGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.