Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6484 | 5' | -52.6 | NC_001847.1 | + | 113854 | 0.66 | 0.947984 |
Target: 5'- gUC-CCCGUggauGCCGCGGUccgcuACAAAGa -3' miRNA: 3'- aAGaGGGCG----CGGCGCCAuuu--UGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 14298 | 0.66 | 0.952366 |
Target: 5'- cUCUCCgGCGUCGCGGc--------- -3' miRNA: 3'- aAGAGGgCGCGGCGCCauuuuguuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 121749 | 0.66 | 0.947984 |
Target: 5'- uUUCUCCCGgGcCCGCGGcgcgcccGGACGu-- -3' miRNA: 3'- -AAGAGGGCgC-GGCGCCau-----UUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 20083 | 0.66 | 0.956493 |
Target: 5'- -gCUCCCGCGgCGCGGcccGGCc--- -3' miRNA: 3'- aaGAGGGCGCgGCGCCauuUUGuuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 21749 | 0.66 | 0.956493 |
Target: 5'- ---gCCCGCGCgCGCGGggGGGCc--- -3' miRNA: 3'- aagaGGGCGCG-GCGCCauUUUGuuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 35895 | 0.66 | 0.956493 |
Target: 5'- -aCUCCCGCGCCG-GcUGcGACAAc- -3' miRNA: 3'- aaGAGGGCGCGGCgCcAUuUUGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 93147 | 0.66 | 0.956493 |
Target: 5'- cUUCgUUCCGCGCCGacgcagcgcuCGGcGAGACAGAc -3' miRNA: 3'- -AAG-AGGGCGCGGC----------GCCaUUUUGUUUu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 19853 | 0.67 | 0.922146 |
Target: 5'- -cCUCCgGCGCCGCuGUGGAcACGc-- -3' miRNA: 3'- aaGAGGgCGCGGCGcCAUUU-UGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 74508 | 0.67 | 0.933275 |
Target: 5'- ---gCCUGCGCCGCGcgcuGGACGAGAc -3' miRNA: 3'- aagaGGGCGCGGCGCcau-UUUGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 103332 | 0.67 | 0.930048 |
Target: 5'- cUCUgccCCCGCGCCGCccaccgccacggccGUAAGGCAGGc -3' miRNA: 3'- aAGA---GGGCGCGGCGc-------------CAUUUUGUUUu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 90255 | 0.67 | 0.927844 |
Target: 5'- --gUCCCGCaGCaCGUGGU-AGGCGAAAa -3' miRNA: 3'- aagAGGGCG-CG-GCGCCAuUUUGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 24235 | 0.67 | 0.916184 |
Target: 5'- aUCUCCacguucagccgcCGCGCgGCGGgcgAGAGCAu-- -3' miRNA: 3'- aAGAGG------------GCGCGgCGCCa--UUUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 116235 | 0.67 | 0.921562 |
Target: 5'- -gCUCCCGCGCaggagcaCGUGGUGcu-CAAGAu -3' miRNA: 3'- aaGAGGGCGCG-------GCGCCAUuuuGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 20620 | 0.67 | 0.919793 |
Target: 5'- -gUUCCCGCGCCGCGccgaccgcuGCAGu- -3' miRNA: 3'- aaGAGGGCGCGGCGCcauuu----UGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 77095 | 0.67 | 0.922146 |
Target: 5'- aUCggcggCCCGCG-CGCGGUAGcGGCGGGg -3' miRNA: 3'- aAGa----GGGCGCgGCGCCAUU-UUGUUUu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 86726 | 0.67 | 0.938441 |
Target: 5'- -aCUCCaCGCGgcCCGCGG-AGGGCGAu- -3' miRNA: 3'- aaGAGG-GCGC--GGCGCCaUUUUGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 8971 | 0.67 | 0.922146 |
Target: 5'- cUCaUCUCGgGCCGgGGgcGGGCAGAc -3' miRNA: 3'- aAG-AGGGCgCGGCgCCauUUUGUUUu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 56091 | 0.67 | 0.927844 |
Target: 5'- -gCUCCgGCGCCGCGuu-AAGCGc-- -3' miRNA: 3'- aaGAGGgCGCGGCGCcauUUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 68153 | 0.67 | 0.916184 |
Target: 5'- cUUCUCCgGCGCCGCGcc---GCAGc- -3' miRNA: 3'- -AAGAGGgCGCGGCGCcauuuUGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 34709 | 0.68 | 0.896718 |
Target: 5'- -aCUUgCGCGCCGCGcUGGAGCGc-- -3' miRNA: 3'- aaGAGgGCGCGGCGCcAUUUUGUuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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