Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6484 | 5' | -52.6 | NC_001847.1 | + | 118839 | 0.75 | 0.525131 |
Target: 5'- ---aCCCGCGCCGCGGgu-GACGGu- -3' miRNA: 3'- aagaGGGCGCGGCGCCauuUUGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 5049 | 0.73 | 0.674664 |
Target: 5'- gUCccagCCCGCGUCGCGGUcgGGCGc-- -3' miRNA: 3'- aAGa---GGGCGCGGCGCCAuuUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 10510 | 0.72 | 0.700248 |
Target: 5'- ---cCCCGCGCUgcugcgggccauggaGCGGUGGAACGAGGa -3' miRNA: 3'- aagaGGGCGCGG---------------CGCCAUUUUGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 132128 | 0.72 | 0.717108 |
Target: 5'- cUCggcgcggCCCGCGaCGCGGUGGAGCGc-- -3' miRNA: 3'- aAGa------GGGCGCgGCGCCAUUUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 133388 | 0.71 | 0.778133 |
Target: 5'- -cCUUCCGCGgCGCGGUGGAGu---- -3' miRNA: 3'- aaGAGGGCGCgGCGCCAUUUUguuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 17625 | 0.7 | 0.797427 |
Target: 5'- -cCUCgUCGuCGCCGCGcGUGGAGCGGAAc -3' miRNA: 3'- aaGAG-GGC-GCGGCGC-CAUUUUGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 54802 | 0.7 | 0.797427 |
Target: 5'- -cCUUCCGCGCCGCGcuGgcGAGCGc-- -3' miRNA: 3'- aaGAGGGCGCGGCGC--CauUUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 34709 | 0.68 | 0.896718 |
Target: 5'- -aCUUgCGCGCCGCGcUGGAGCGc-- -3' miRNA: 3'- aaGAGgGCGCGGCGCcAUUUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 52849 | 0.68 | 0.882455 |
Target: 5'- aUUCUCCCGC-CC-CGGUA--ACAGAu -3' miRNA: 3'- -AAGAGGGCGcGGcGCCAUuuUGUUUu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 87188 | 0.69 | 0.867205 |
Target: 5'- -cCUCCaCGCGCUGCuGG-AGAACAAc- -3' miRNA: 3'- aaGAGG-GCGCGGCG-CCaUUUUGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 12481 | 0.69 | 0.859224 |
Target: 5'- -cUUCCCGCGUgGCGGcgGGGGCGGc- -3' miRNA: 3'- aaGAGGGCGCGgCGCCa-UUUUGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 16501 | 0.69 | 0.842586 |
Target: 5'- -cCUCCCGCGC-GCGGccugAGGugGAGAg -3' miRNA: 3'- aaGAGGGCGCGgCGCCa---UUUugUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 104573 | 0.7 | 0.825097 |
Target: 5'- -aCUCcaCCGCGCCGCGG-AAGGCc--- -3' miRNA: 3'- aaGAG--GGCGCGGCGCCaUUUUGuuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 101204 | 0.66 | 0.960369 |
Target: 5'- gUUCUCCaGCGCCucGCGGUAccGGcCGAAGa -3' miRNA: 3'- -AAGAGGgCGCGG--CGCCAU--UUuGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 43133 | 0.66 | 0.960369 |
Target: 5'- -gCUCUCGCgGCUGUGG--GAGCAGGAa -3' miRNA: 3'- aaGAGGGCG-CGGCGCCauUUUGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 82849 | 0.66 | 0.960369 |
Target: 5'- ---gCCCGCGcCCGCGGUcgcgcacACAAAGc -3' miRNA: 3'- aagaGGGCGC-GGCGCCAuuu----UGUUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 97335 | 0.66 | 0.960369 |
Target: 5'- gUCgcgCCCGCccgGCCGCGuGUcAAACAGc- -3' miRNA: 3'- aAGa--GGGCG---CGGCGC-CAuUUUGUUuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 116475 | 0.66 | 0.960369 |
Target: 5'- gUUCUgCUCaGCGUCGCGGgcGGGCAc-- -3' miRNA: 3'- -AAGA-GGG-CGCGGCGCCauUUUGUuuu -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 75866 | 0.66 | 0.960369 |
Target: 5'- gUUUCCCGcCGCCGgGGcucgAGAGCcAAAu -3' miRNA: 3'- aAGAGGGC-GCGGCgCCa---UUUUGuUUU- -5' |
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6484 | 5' | -52.6 | NC_001847.1 | + | 27153 | 1.04 | 0.00884 |
Target: 5'- cUUCUCCCGCGCCGCGGUAAAACAAAAa -3' miRNA: 3'- -AAGAGGGCGCGGCGCCAUUUUGUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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