miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 27153 1.04 0.00884
Target:  5'- cUUCUCCCGCGCCGCGGUAAAACAAAAa -3'
miRNA:   3'- -AAGAGGGCGCGGCGCCAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 29315 0.72 0.717108
Target:  5'- cUCggcgcggCCCGCGaCGCGGUGGAGCGc-- -3'
miRNA:   3'- aAGa------GGGCGCgGCGCCAUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 30575 0.71 0.778133
Target:  5'- -cCUUCCGCGgCGCGGUGGAGu---- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCAUUUUguuuu -5'
6484 5' -52.6 NC_001847.1 + 33722 0.71 0.737888
Target:  5'- -gCUCUCGgaGCCGCGGcggGAGACGAGAc -3'
miRNA:   3'- aaGAGGGCg-CGGCGCCa--UUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 34709 0.68 0.896718
Target:  5'- -aCUUgCGCGCCGCGcUGGAGCGc-- -3'
miRNA:   3'- aaGAGgGCGCGGCGCcAUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 35459 0.66 0.947984
Target:  5'- ---gCCCGCGCCGCGcgcc-GCAAAGc -3'
miRNA:   3'- aagaGGGCGCGGCGCcauuuUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 35895 0.66 0.956493
Target:  5'- -aCUCCCGCGCCG-GcUGcGACAAc- -3'
miRNA:   3'- aaGAGGGCGCGGCgCcAUuUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 43133 0.66 0.960369
Target:  5'- -gCUCUCGCgGCUGUGG--GAGCAGGAa -3'
miRNA:   3'- aaGAGGGCG-CGGCGCCauUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 46580 0.73 0.663931
Target:  5'- aUCUCUCGCGCCGCGcgcGAGCGc-- -3'
miRNA:   3'- aAGAGGGCGCGGCGCcauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 51342 0.69 0.87495
Target:  5'- -gUUCgCGUGCCGCGGguuGGCGAAc -3'
miRNA:   3'- aaGAGgGCGCGGCGCCauuUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 52088 0.69 0.859224
Target:  5'- cUCUUcggCCGCGCCGCGGcccAAGCGc-- -3'
miRNA:   3'- aAGAG---GGCGCGGCGCCau-UUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 52849 0.68 0.882455
Target:  5'- aUUCUCCCGC-CC-CGGUA--ACAGAu -3'
miRNA:   3'- -AAGAGGGCGcGGcGCCAUuuUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 54802 0.7 0.797427
Target:  5'- -cCUUCCGCGCCGCGcuGgcGAGCGc-- -3'
miRNA:   3'- aaGAGGGCGCGGCGC--CauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 56091 0.67 0.927844
Target:  5'- -gCUCCgGCGCCGCGuu-AAGCGc-- -3'
miRNA:   3'- aaGAGGgCGCGGCGCcauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 57080 0.69 0.87495
Target:  5'- -aCUCCUGCGCCGUcGUGGccGCGAGGg -3'
miRNA:   3'- aaGAGGGCGCGGCGcCAUUu-UGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 57576 0.68 0.903467
Target:  5'- cUCggCCCGCgcgGCCGCGG-AAAGCGc-- -3'
miRNA:   3'- aAGa-GGGCG---CGGCGCCaUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 59386 0.76 0.494387
Target:  5'- gUUCaCCCGCGCgGCGGgcGAGCAGu- -3'
miRNA:   3'- -AAGaGGGCGCGgCGCCauUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 68153 0.67 0.916184
Target:  5'- cUUCUCCgGCGCCGCGcc---GCAGc- -3'
miRNA:   3'- -AAGAGGgCGCGGCGCcauuuUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 68738 0.71 0.74813
Target:  5'- gUCagCCCGCGCCGCGGauguGCGc-- -3'
miRNA:   3'- aAGa-GGGCGCGGCGCCauuuUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 74121 0.66 0.943344
Target:  5'- -gUUCCCG-GCCGUGGUGcuGCGc-- -3'
miRNA:   3'- aaGAGGGCgCGGCGCCAUuuUGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.