miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 5' -52.6 NC_001847.1 + 17625 0.7 0.797427
Target:  5'- -cCUCgUCGuCGCCGCGcGUGGAGCGGAAc -3'
miRNA:   3'- aaGAG-GGC-GCGGCGC-CAUUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 54802 0.7 0.797427
Target:  5'- -cCUUCCGCGCCGCGcuGgcGAGCGc-- -3'
miRNA:   3'- aaGAGGGCGCGGCGC--CauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 105432 0.7 0.825097
Target:  5'- -gCUCCCGCGCCGCaGUcucgcgcccAAGCGAu- -3'
miRNA:   3'- aaGAGGGCGCGGCGcCAu--------UUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 1760 0.7 0.825097
Target:  5'- -aCUCcaCCGCGCCGCGG-AAGGCc--- -3'
miRNA:   3'- aaGAG--GGCGCGGCGCCaUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 104573 0.7 0.825097
Target:  5'- -aCUCcaCCGCGCCGCGG-AAGGCc--- -3'
miRNA:   3'- aaGAG--GGCGCGGCGCCaUUUUGuuuu -5'
6484 5' -52.6 NC_001847.1 + 88390 0.69 0.833943
Target:  5'- ---cCCCGCGCgGCGGgcGGGCGc-- -3'
miRNA:   3'- aagaGGGCGCGgCGCCauUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 125065 0.69 0.842586
Target:  5'- -gCUCCCGCG-CGCGGcGGGGCGc-- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCaUUUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 16311 0.69 0.842586
Target:  5'- gUCaCCCGCGgCGCGGguguAGGCAAGc -3'
miRNA:   3'- aAGaGGGCGCgGCGCCau--UUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 16501 0.69 0.842586
Target:  5'- -cCUCCCGCGC-GCGGccugAGGugGAGAg -3'
miRNA:   3'- aaGAGGGCGCGgCGCCa---UUUugUUUU- -5'
6484 5' -52.6 NC_001847.1 + 105611 0.69 0.859224
Target:  5'- cUCgagcgCCCGCGCCGCGc--GGGCGAGc -3'
miRNA:   3'- aAGa----GGGCGCGGCGCcauUUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 12481 0.69 0.859224
Target:  5'- -cUUCCCGCGUgGCGGcgGGGGCGGc- -3'
miRNA:   3'- aaGAGGGCGCGgCGCCa-UUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 52088 0.69 0.859224
Target:  5'- cUCUUcggCCGCGCCGCGGcccAAGCGc-- -3'
miRNA:   3'- aAGAG---GGCGCGGCGCCau-UUUGUuuu -5'
6484 5' -52.6 NC_001847.1 + 103854 0.69 0.862444
Target:  5'- cUC-CCCGCGCCcgccuggucggugauGCGGUuuGGCAGGu -3'
miRNA:   3'- aAGaGGGCGCGG---------------CGCCAuuUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 102024 0.69 0.867205
Target:  5'- -gCUCgCCGcCGCCGCGGUcgGcCAGGAu -3'
miRNA:   3'- aaGAG-GGC-GCGGCGCCAuuUuGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 87188 0.69 0.867205
Target:  5'- -cCUCCaCGCGCUGCuGG-AGAACAAc- -3'
miRNA:   3'- aaGAGG-GCGCGGCG-CCaUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 51342 0.69 0.87495
Target:  5'- -gUUCgCGUGCCGCGGguuGGCGAAc -3'
miRNA:   3'- aaGAGgGCGCGGCGCCauuUUGUUUu -5'
6484 5' -52.6 NC_001847.1 + 84552 0.69 0.87495
Target:  5'- ---gCCCGCGUCGCagcgcuccaGGUAGAACAGc- -3'
miRNA:   3'- aagaGGGCGCGGCG---------CCAUUUUGUUuu -5'
6484 5' -52.6 NC_001847.1 + 57080 0.69 0.87495
Target:  5'- -aCUCCUGCGCCGUcGUGGccGCGAGGg -3'
miRNA:   3'- aaGAGGGCGCGGCGcCAUUu-UGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 80009 0.69 0.87495
Target:  5'- ---cCCCGCGCCcgcGCGGaugcGAAGCAAAAa -3'
miRNA:   3'- aagaGGGCGCGG---CGCCa---UUUUGUUUU- -5'
6484 5' -52.6 NC_001847.1 + 89283 0.69 0.87495
Target:  5'- gUUUCgCGCGCCGCGGccGAGGCc--- -3'
miRNA:   3'- aAGAGgGCGCGGCGCCa-UUUUGuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.