Results 41 - 60 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6485 | 5' | -68.2 | NC_001847.1 | + | 119993 | 0.66 | 0.347567 |
Target: 5'- cGUCcaaGCGGCCCCgacgcgcaguagcaaGGCCaGCaCCGCCg -3' miRNA: 3'- -CAGaccCGCCGGGG---------------CCGGcCG-GGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 24459 | 0.66 | 0.36666 |
Target: 5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3' miRNA: 3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 4341 | 0.66 | 0.374193 |
Target: 5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3' miRNA: 3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 2371 | 0.66 | 0.35191 |
Target: 5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3' miRNA: 3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 26397 | 0.66 | 0.374193 |
Target: 5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3' miRNA: 3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 2240 | 0.67 | 0.323005 |
Target: 5'- -gCUGGGCGcgggcgugugguaGuCCCCGGgCGGCacgcggcggaagCCGCCg -3' miRNA: 3'- caGACCCGC-------------C-GGGGCCgGCCG------------GGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 80613 | 0.66 | 0.374193 |
Target: 5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3' miRNA: 3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 31836 | 0.67 | 0.323689 |
Target: 5'- ---gGGGuUGGCgCgCGGCCGcCCCGCCg -3' miRNA: 3'- cagaCCC-GCCGgG-GCCGGCcGGGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 29297 | 0.67 | 0.329888 |
Target: 5'- cUCcGGGCcGCCgagcugcUCGGCgCGGCCCGCg -3' miRNA: 3'- cAGaCCCGcCGG-------GGCCG-GCCGGGUGg -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 15115 | 0.66 | 0.337585 |
Target: 5'- gGUCggGGGagGGCCuaGGCCG-CUCACCc -3' miRNA: 3'- -CAGa-CCCg-CCGGggCCGGCcGGGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 55486 | 0.66 | 0.337585 |
Target: 5'- aUCgUGGcGCGGCUCCGGCaguGGUUCGgCg -3' miRNA: 3'- cAG-ACC-CGCCGGGGCCGg--CCGGGUgG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 100951 | 0.66 | 0.344694 |
Target: 5'- -aCUcGGGCGGgacgugcgcgcCCCCGGCCcGCagCGCCu -3' miRNA: 3'- caGA-CCCGCC-----------GGGGCCGGcCGg-GUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 31072 | 0.66 | 0.344694 |
Target: 5'- -gCUGGG-GGCUCggcgcgccgcugCGGCCGGUgUACCu -3' miRNA: 3'- caGACCCgCCGGG------------GCCGGCCGgGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 26991 | 0.66 | 0.35191 |
Target: 5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3' miRNA: 3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 120959 | 0.66 | 0.354826 |
Target: 5'- aUgUGGGCGGaCCCagcgccgcguaagcgCGGCCGucGCCCuagcgGCCg -3' miRNA: 3'- cAgACCCGCC-GGG---------------GCCGGC--CGGG-----UGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 10570 | 0.66 | 0.359232 |
Target: 5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3' miRNA: 3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 131720 | 0.66 | 0.365912 |
Target: 5'- -cCUGGGCugcgccuGGCCCCccgGGCUGcucuCCCGCUg -3' miRNA: 3'- caGACCCG-------CCGGGG---CCGGCc---GGGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 101160 | 0.66 | 0.36666 |
Target: 5'- -gCUGGGCccagCCCGGCCaGCgCGCCc -3' miRNA: 3'- caGACCCGccg-GGGCCGGcCGgGUGG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 100622 | 0.66 | 0.36666 |
Target: 5'- ---cGGGCGGCgCaucGCCGGCgCCGuCCg -3' miRNA: 3'- cagaCCCGCCGgGgc-CGGCCG-GGU-GG- -5' |
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6485 | 5' | -68.2 | NC_001847.1 | + | 127088 | 0.66 | 0.374193 |
Target: 5'- cUCUGcGcGCgGGCCgCgCGGCUuugGGUCCACCg -3' miRNA: 3'- cAGAC-C-CG-CCGG-G-GCCGG---CCGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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