miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 10570 0.66 0.359232
Target:  5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3'
miRNA:   3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 131720 0.66 0.365912
Target:  5'- -cCUGGGCugcgccuGGCCCCccgGGCUGcucuCCCGCUg -3'
miRNA:   3'- caGACCCG-------CCGGGG---CCGGCc---GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 18668 0.66 0.367409
Target:  5'- ---cGGGagugcagguacgcgaGGCCCCGcaGCaCGGCCCGCg -3'
miRNA:   3'- cagaCCCg--------------CCGGGGC--CG-GCCGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 96576 0.66 0.374193
Target:  5'- -cCUccGCGGCUCCGGCagcaGGCgCUGCCa -3'
miRNA:   3'- caGAccCGCCGGGGCCGg---CCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 105770 0.66 0.344694
Target:  5'- ---cGcGGCaGCUCCGGCCG-CCCGCg -3'
miRNA:   3'- cagaC-CCGcCGGGGCCGGCcGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 115856 0.66 0.354826
Target:  5'- cGUUUGuuGGCGGCCcgCCGcacagacgcugcgccGCCGGCUCGCg -3'
miRNA:   3'- -CAGAC--CCGCCGG--GGC---------------CGGCCGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 24459 0.66 0.36666
Target:  5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3'
miRNA:   3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 4341 0.66 0.374193
Target:  5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3'
miRNA:   3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 120959 0.66 0.354826
Target:  5'- aUgUGGGCGGaCCCagcgccgcguaagcgCGGCCGucGCCCuagcgGCCg -3'
miRNA:   3'- cAgACCCGCC-GGG---------------GCCGGC--CGGG-----UGG- -5'
6485 5' -68.2 NC_001847.1 + 26397 0.66 0.374193
Target:  5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3'
miRNA:   3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 3147 0.66 0.365912
Target:  5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3'
miRNA:   3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 4630 0.66 0.359232
Target:  5'- ---cGGGCGGCCC--GCCGGCgCUcgcgcGCCu -3'
miRNA:   3'- cagaCCCGCCGGGgcCGGCCG-GG-----UGG- -5'
6485 5' -68.2 NC_001847.1 + 101160 0.66 0.36666
Target:  5'- -gCUGGGCccagCCCGGCCaGCgCGCCc -3'
miRNA:   3'- caGACCCGccg-GGGCCGGcCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 100622 0.66 0.36666
Target:  5'- ---cGGGCGGCgCaucGCCGGCgCCGuCCg -3'
miRNA:   3'- cagaCCCGCCGgGgc-CGGCCG-GGU-GG- -5'
6485 5' -68.2 NC_001847.1 + 127088 0.66 0.374193
Target:  5'- cUCUGcGcGCgGGCCgCgCGGCUuugGGUCCACCg -3'
miRNA:   3'- cAGAC-C-CG-CCGG-G-GCCGG---CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 80613 0.66 0.374193
Target:  5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3'
miRNA:   3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 100951 0.66 0.344694
Target:  5'- -aCUcGGGCGGgacgugcgcgcCCCCGGCCcGCagCGCCu -3'
miRNA:   3'- caGA-CCCGCC-----------GGGGCCGGcCGg-GUGG- -5'
6485 5' -68.2 NC_001847.1 + 31072 0.66 0.344694
Target:  5'- -gCUGGG-GGCUCggcgcgccgcugCGGCCGGUgUACCu -3'
miRNA:   3'- caGACCCgCCGGG------------GCCGGCCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 34585 0.66 0.35191
Target:  5'- -cCU-GGCGGCaauaaucgCCgCGGCCGGCUCcCCg -3'
miRNA:   3'- caGAcCCGCCG--------GG-GCCGGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 30400 0.66 0.35191
Target:  5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3'
miRNA:   3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.