miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 68801 0.66 0.374193
Target:  5'- aUCgccacGGCGGCgCCCGcGCCccaCCCGCCg -3'
miRNA:   3'- cAGac---CCGCCG-GGGC-CGGcc-GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 24459 0.66 0.36666
Target:  5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3'
miRNA:   3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 131720 0.66 0.365912
Target:  5'- -cCUGGGCugcgccuGGCCCCccgGGCUGcucuCCCGCUg -3'
miRNA:   3'- caGACCCG-------CCGGGG---CCGGCc---GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 26649 1.09 0.000222
Target:  5'- gGUCUGGGCGGCCCCGGCCGGCCCACCu -3'
miRNA:   3'- -CAGACCCGCCGGGGCCGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 80613 0.66 0.374193
Target:  5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3'
miRNA:   3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 50354 0.66 0.374193
Target:  5'- ---aGGGUaaagcuGGCgCUGGCCGGCgUCGCCc -3'
miRNA:   3'- cagaCCCG------CCGgGGCCGGCCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 127088 0.66 0.374193
Target:  5'- cUCUGcGcGCgGGCCgCgCGGCUuugGGUCCACCg -3'
miRNA:   3'- cAGAC-C-CG-CCGG-G-GCCGG---CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 6365 0.66 0.374193
Target:  5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3'
miRNA:   3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5'
6485 5' -68.2 NC_001847.1 + 100622 0.66 0.36666
Target:  5'- ---cGGGCGGCgCaucGCCGGCgCCGuCCg -3'
miRNA:   3'- cagaCCCGCCGgGgc-CGGCCG-GGU-GG- -5'
6485 5' -68.2 NC_001847.1 + 58299 0.66 0.36666
Target:  5'- -aCgGcGGCGGCCggcaGGCCGGCauggCGCCg -3'
miRNA:   3'- caGaC-CCGCCGGgg--CCGGCCGg---GUGG- -5'
6485 5' -68.2 NC_001847.1 + 27971 0.66 0.36666
Target:  5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3'
miRNA:   3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 18668 0.66 0.367409
Target:  5'- ---cGGGagugcagguacgcgaGGCCCCGcaGCaCGGCCCGCg -3'
miRNA:   3'- cagaCCCg--------------CCGGGGC--CG-GCCGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 26397 0.66 0.374193
Target:  5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3'
miRNA:   3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 101160 0.66 0.36666
Target:  5'- -gCUGGGCccagCCCGGCCaGCgCGCCc -3'
miRNA:   3'- caGACCCGccg-GGGCCGGcCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 4341 0.66 0.374193
Target:  5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3'
miRNA:   3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 122411 0.66 0.373435
Target:  5'- -gCUGGGCcGCaCCCGGCCcuccaaaauccugGGCagcggCACCu -3'
miRNA:   3'- caGACCCGcCG-GGGCCGG-------------CCGg----GUGG- -5'
6485 5' -68.2 NC_001847.1 + 84870 0.66 0.36666
Target:  5'- -gCUaGGCGGCCCaCGuaCGcGCCCAgCg -3'
miRNA:   3'- caGAcCCGCCGGG-GCcgGC-CGGGUgG- -5'
6485 5' -68.2 NC_001847.1 + 3147 0.66 0.365912
Target:  5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3'
miRNA:   3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 96576 0.66 0.374193
Target:  5'- -cCUccGCGGCUCCGGCagcaGGCgCUGCCa -3'
miRNA:   3'- caGAccCGCCGGGGCCGg---CCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 35388 0.66 0.374193
Target:  5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3'
miRNA:   3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.