miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 96997 0.66 0.36442
Target:  5'- cUCgGGGCGGCgcgccgcgcgaagaCUCGGugcCCGGCgCACCc -3'
miRNA:   3'- cAGaCCCGCCG--------------GGGCC---GGCCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 107443 0.66 0.359232
Target:  5'- ---cGGGCGGCCC--GCCGGCgCUcgcgcGCCu -3'
miRNA:   3'- cagaCCCGCCGGGgcCGGCCG-GG-----UGG- -5'
6485 5' -68.2 NC_001847.1 + 134168 0.66 0.359232
Target:  5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3'
miRNA:   3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5'
6485 5' -68.2 NC_001847.1 + 32285 0.66 0.359232
Target:  5'- cGUCcgcgUGGcGCGGCCCCGcgacGCCgccgcggaacgGGaCCCGCUg -3'
miRNA:   3'- -CAG----ACC-CGCCGGGGC----CGG-----------CC-GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 64446 0.66 0.359232
Target:  5'- ---cGGGC-GCCCCcGCCGccGCCCGCg -3'
miRNA:   3'- cagaCCCGcCGGGGcCGGC--CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 93793 0.66 0.359232
Target:  5'- -gCUGGuuccgcGCGGCCgCgCGGCCGaGUCC-CCg -3'
miRNA:   3'- caGACC------CGCCGG-G-GCCGGC-CGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 113383 0.66 0.359232
Target:  5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3'
miRNA:   3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 31355 0.66 0.359232
Target:  5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3'
miRNA:   3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5'
6485 5' -68.2 NC_001847.1 + 4630 0.66 0.359232
Target:  5'- ---cGGGCGGCCC--GCCGGCgCUcgcgcGCCu -3'
miRNA:   3'- cagaCCCGCCGGGgcCGGCCG-GG-----UGG- -5'
6485 5' -68.2 NC_001847.1 + 76302 0.66 0.359232
Target:  5'- ---aGGuGCGGgCCCGGCCcaaguGCCgACCc -3'
miRNA:   3'- cagaCC-CGCCgGGGCCGGc----CGGgUGG- -5'
6485 5' -68.2 NC_001847.1 + 32692 0.66 0.359232
Target:  5'- -gCUGGaGgGGCgCCCGaCCuGCCCGCUg -3'
miRNA:   3'- caGACC-CgCCG-GGGCcGGcCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 10570 0.66 0.359232
Target:  5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3'
miRNA:   3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 87661 0.66 0.358495
Target:  5'- uGUUUGGGCugcgccgcauGGCCCgGGCgcuggggcugcugCGGCgCCGCg -3'
miRNA:   3'- -CAGACCCG----------CCGGGgCCG-------------GCCG-GGUGg -5'
6485 5' -68.2 NC_001847.1 + 115856 0.66 0.354826
Target:  5'- cGUUUGuuGGCGGCCcgCCGcacagacgcugcgccGCCGGCUCGCg -3'
miRNA:   3'- -CAGAC--CCGCCGG--GGC---------------CGGCCGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 120959 0.66 0.354826
Target:  5'- aUgUGGGCGGaCCCagcgccgcguaagcgCGGCCGucGCCCuagcgGCCg -3'
miRNA:   3'- cAgACCCGCC-GGG---------------GCCGGC--CGGG-----UGG- -5'
6485 5' -68.2 NC_001847.1 + 121873 0.66 0.35191
Target:  5'- -----cGUGGCCCUGGaCgCGGCCUGCCu -3'
miRNA:   3'- cagaccCGCCGGGGCC-G-GCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 129804 0.66 0.35191
Target:  5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3'
miRNA:   3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5'
6485 5' -68.2 NC_001847.1 + 105184 0.66 0.35191
Target:  5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3'
miRNA:   3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 12936 0.66 0.35191
Target:  5'- ---aGGGCacccGGCCCCGGCuaguguggCGGCgCGCg -3'
miRNA:   3'- cagaCCCG----CCGGGGCCG--------GCCGgGUGg -5'
6485 5' -68.2 NC_001847.1 + 133213 0.66 0.35191
Target:  5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3'
miRNA:   3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.