miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6487 5' -50.9 NC_001847.1 + 135122 0.66 0.988065
Target:  5'- aCCcCCccgGGGUcgcaggggGCCCGCGCGg -3'
miRNA:   3'- -GGcGGuaaCCUAaaaaa---CGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 134842 0.66 0.993261
Target:  5'- uCCGgCGgggcgcGGGgacggcGCCCGCGCGg -3'
miRNA:   3'- -GGCgGUaa----CCUaaaaaaCGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 134180 0.67 0.981082
Target:  5'- cCCGCCGgcccGGG-----UGCCgGCGCa -3'
miRNA:   3'- -GGCGGUaa--CCUaaaaaACGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 133728 0.68 0.970825
Target:  5'- cCCGCCAccGcGGUgcccgUGCcgCCGCGCGa -3'
miRNA:   3'- -GGCGGUaaC-CUAaaaa-ACG--GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 133457 0.66 0.987441
Target:  5'- aCGCCG-UGGAccccgagaacUGgCCGCGCGa -3'
miRNA:   3'- gGCGGUaACCUaaaaa-----ACgGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 133199 0.66 0.992229
Target:  5'- cUCGCUGgaGGAgcuc-UGCgCCGCGCGc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACG-GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 132894 0.69 0.941421
Target:  5'- gCCGCCcggGGAcuaccacacGCCCGCGCc -3'
miRNA:   3'- -GGCGGuaaCCUaaaaaa---CGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 132374 0.66 0.988367
Target:  5'- gCCGCCGgcGGGggc---GCCgGCGCc -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGgCGCGc -5'
6487 5' -50.9 NC_001847.1 + 132322 0.79 0.513711
Target:  5'- cCCGCCGgcGGAgg---UGCCgGCGCGg -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaACGGgCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 132130 0.66 0.989792
Target:  5'- aCCGCCccuAUUGGGcggcgcUGCugCCGCGCa -3'
miRNA:   3'- -GGCGG---UAACCUaaaaa-ACG--GGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 131976 0.66 0.993261
Target:  5'- gCCGCgAggcgcUGGAggcg--GCCCGcCGCGc -3'
miRNA:   3'- -GGCGgUa----ACCUaaaaaaCGGGC-GCGC- -5'
6487 5' -50.9 NC_001847.1 + 131826 0.67 0.977858
Target:  5'- gCGCCGgcGGcagcggcGCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCuaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 131666 0.68 0.967734
Target:  5'- gCCGCCGgucggGGAcgccaUGgCCGCGCa -3'
miRNA:   3'- -GGCGGUaa---CCUaaaaaACgGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 131285 0.73 0.811192
Target:  5'- gCCGCCGcUGGAgg----GCCCGCuGCu -3'
miRNA:   3'- -GGCGGUaACCUaaaaaaCGGGCG-CGc -5'
6487 5' -50.9 NC_001847.1 + 130934 0.68 0.964418
Target:  5'- aCCGCgCA--GGGcUUUggcUGCCUGCGCGc -3'
miRNA:   3'- -GGCG-GUaaCCUaAAAa--ACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 130521 0.68 0.973697
Target:  5'- gCGCCGgcGGGcc----GCCCGCGCc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaaCGGGCGCGc -5'
6487 5' -50.9 NC_001847.1 + 129778 0.69 0.956299
Target:  5'- aCCGCCGgagccUGGGcccggccGCgCCGCGCGa -3'
miRNA:   3'- -GGCGGUa----ACCUaaaaaa-CG-GGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 128857 0.67 0.98316
Target:  5'- cUCGCCGa-GGuccgc-UGCCUGCGCGa -3'
miRNA:   3'- -GGCGGUaaCCuaaaaaACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 127122 1.12 0.005131
Target:  5'- uCCGCCAUUGGAUUUUUUGCCCGCGCGg -3'
miRNA:   3'- -GGCGGUAACCUAAAAAACGGGCGCGC- -5'
6487 5' -50.9 NC_001847.1 + 127023 0.7 0.922461
Target:  5'- cCCGCCccUGGGgccccgcGCCUGCGCu -3'
miRNA:   3'- -GGCGGuaACCUaaaaaa-CGGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.