miRNA display CGI

Results 1 - 20 of 1253 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6489	5'	-64.1	NC_001847.1	+	106695	0.65	0.57908
	Target:  5'- cGGCGGCCauaggcacuuuccaGuUGGCgGCGugCGCCagGGCGc -3' miRNA:   3'- -CCGCUGG--------------C-GCUGgCGCugGCGG--CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	59291	0.65	0.58099
	Target:  5'- cGGCGggaaACCGUacccagggugccaGGgCGCGG-CGCCGGCGg -3' miRNA:   3'- -CCGC----UGGCG-------------CUgGCGCUgGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	35485	0.65	0.58099
	Target:  5'- aGGCGGCaaagGCGGCgCGCGcggaggccacggcGCgCGCCGaGCGc -3' miRNA:   3'- -CCGCUGg---CGCUG-GCGC-------------UG-GCGGC-CGU- -5'
6489	5'	-64.1	NC_001847.1	+	114433	0.65	0.57908
	Target:  5'- cGGCGGCaacggcaacccaauCGCGAgCGCcucgcuuaucGGCCGCCagcuGGCGg -3' miRNA:   3'- -CCGCUG--------------GCGCUgGCG----------CUGGCGG----CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	30879	0.65	0.58099
	Target:  5'- uGGCGuuugcgccagucGCC-CGGCCGCaGCCcggugaggcgcgcGCCGGCGg -3' miRNA:   3'- -CCGC------------UGGcGCUGGCGcUGG-------------CGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	31856	0.66	0.525353
	Target:  5'- cGCGcCCGgGcucGCCgGCGuuGCUGCCGGCGg -3' miRNA:   3'- cCGCuGGCgC---UGG-CGC--UGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	19248	0.66	0.525353
	Target:  5'- cGCGAgC-CGGCCaaGCGGCgcgaGCCGGCGg -3' miRNA:   3'- cCGCUgGcGCUGG--CGCUGg---CGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	34844	0.66	0.525353
	Target:  5'- aGGCGAgCGCG-CaGCGGgCGaCGGCAg -3' miRNA:   3'- -CCGCUgGCGCuGgCGCUgGCgGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	123577	0.66	0.534658
	Target:  5'- cGGC-ACCGCGgcaGCCGCacCCGCUgGGCGc -3' miRNA:   3'- -CCGcUGGCGC---UGGCGcuGGCGG-CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	67927	0.66	0.534658
	Target:  5'- aGGaCGACgGCGuCCGCGcaGCaCGaCGGCAc -3' miRNA:   3'- -CC-GCUGgCGCuGGCGC--UG-GCgGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	58046	0.66	0.53186
	Target:  5'- uGGCGACC-CGGCugacgcagcuCGCGcuucggcggcgagcGCCGCCGGa- -3' miRNA:   3'- -CCGCUGGcGCUG----------GCGC--------------UGGCGGCCgu -5'
6489	5'	-64.1	NC_001847.1	+	105791	0.66	0.533724
	Target:  5'- aGCGccGCCGgGGCCGCGcgcuggaGCCGCgCGcGCu -3' miRNA:   3'- cCGC--UGGCgCUGGCGC-------UGGCG-GC-CGu -5'
6489	5'	-64.1	NC_001847.1	+	10271	0.66	0.533724
	Target:  5'- gGGCGcauaaaaACCGCgGGCCGCGcGCuCGCCagucagugcGGCGg -3' miRNA:   3'- -CCGC-------UGGCG-CUGGCGC-UG-GCGG---------CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	81029	0.66	0.525353
	Target:  5'- gGGCGA-CGCcGCCGCgGACUGCgggGGCGa -3' miRNA:   3'- -CCGCUgGCGcUGGCG-CUGGCGg--CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	105034	0.66	0.525353
	Target:  5'- aGGCcGCCaGCG-CCGCGGCgcugggCGCgGGCGu -3' miRNA:   3'- -CCGcUGG-CGCuGGCGCUG------GCGgCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	19158	0.66	0.525353
	Target:  5'- aGCGGCCGCGcCCGUuguuACC-CCGcGCAg -3' miRNA:   3'- cCGCUGGCGCuGGCGc---UGGcGGC-CGU- -5'
6489	5'	-64.1	NC_001847.1	+	55688	0.66	0.529068
	Target:  5'- aGGCGGCCGgGGaaaacUCGCGcuucuucgugugcccGCCGCCcucgGGCGc -3' miRNA:   3'- -CCGCUGGCgCU-----GGCGC---------------UGGCGG----CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	76343	0.66	0.525353
	Target:  5'- aGCGACUGCcuaCG-GGCCGCCGGg- -3' miRNA:   3'- cCGCUGGCGcugGCgCUGGCGGCCgu -5'
6489	5'	-64.1	NC_001847.1	+	107219	0.66	0.525353
	Target:  5'- aGGCGcuguCCGCGuccuCCGCGcccuCCGCCcccucGGCc -3' miRNA:   3'- -CCGCu---GGCGCu---GGCGCu---GGCGG-----CCGu -5'
6489	5'	-64.1	NC_001847.1	+	32339	0.66	0.533724
	Target:  5'- cGCGAUCGCgGGCCuguuugaGCGGgUGCUGGCc -3' miRNA:   3'- cCGCUGGCG-CUGG-------CGCUgGCGGCCGu -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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