miRNA display CGI

Results 1 - 20 of 1253 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6489	5'	-64.1	NC_001847.1	+	47572	0.8	0.075176
	Target:  5'- cGGCGGCCGCGcacgcGCCGaggaaGGCCGgCGGCAg -3' miRNA:   3'- -CCGCUGGCGC-----UGGCg----CUGGCgGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	15560	0.81	0.058354
	Target:  5'- cGCGGCCGUcgGGCCGCGGCCGCCGcugcccGCAg -3' miRNA:   3'- cCGCUGGCG--CUGGCGCUGGCGGC------CGU- -5'
6489	5'	-64.1	NC_001847.1	+	130795	0.81	0.061397
	Target:  5'- aGGCGGCCGCGGCCggggcggagGCGGCCG-CGGCc -3' miRNA:   3'- -CCGCUGGCGCUGG---------CGCUGGCgGCCGu -5'
6489	5'	-64.1	NC_001847.1	+	52294	0.81	0.061397
	Target:  5'- uGUGugCGCGACCGCGGgCGCgGGCGg -3' miRNA:   3'- cCGCugGCGCUGGCGCUgGCGgCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	32111	0.81	0.064594
	Target:  5'- cGCGGCUGCGGCC-CGcccGCCGCCGGCGc -3' miRNA:   3'- cCGCUGGCGCUGGcGC---UGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	36958	0.8	0.069692
	Target:  5'- cGGgGGCUGCGGCCagcGCGGgCGCCGGCGa -3' miRNA:   3'- -CCgCUGGCGCUGG---CGCUgGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	59365	0.8	0.069692
	Target:  5'- cGGCGGCgGCaGCgGCGGCgGCCGGCAa -3' miRNA:   3'- -CCGCUGgCGcUGgCGCUGgCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	116803	0.8	0.071476
	Target:  5'- gGGCGACCGCGACUGCGc---CCGGCAg -3' miRNA:   3'- -CCGCUGGCGCUGGCGCuggcGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	75556	0.8	0.073303
	Target:  5'- cGGCGGCCGagcuGcCCGUGAgCGCCGGCAa -3' miRNA:   3'- -CCGCUGGCg---CuGGCGCUgGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	131991	0.82	0.056888
	Target:  5'- aGGCGGCC-CG-CCGCG-CCGCCGGCGc -3' miRNA:   3'- -CCGCUGGcGCuGGCGCuGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	70702	0.82	0.056743
	Target:  5'- gGGCuGGCCGUGGCCGCcgacuacGACgCGCCGGCAg -3' miRNA:   3'- -CCG-CUGGCGCUGGCG-------CUG-GCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	106119	0.82	0.055457
	Target:  5'- cGGCGAgCGCGgcgcgggcGCCGCuGCCGCCGGCGc -3' miRNA:   3'- -CCGCUgGCGC--------UGGCGcUGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	87299	0.88	0.020311
	Target:  5'- cGCGGCCGCGGCCGauuugcgcgcauUGGCCGCCGGCAu -3' miRNA:   3'- cCGCUGGCGCUGGC------------GCUGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	34782	0.86	0.028222
	Target:  5'- cGCGGCCGCGGcgcgcggcuacgacCCGCGGCCGCUGGCGc -3' miRNA:   3'- cCGCUGGCGCU--------------GGCGCUGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	134246	0.85	0.032361
	Target:  5'- cGGCGGCCgGCGGCCGCGGCgGCCccGGCGc -3' miRNA:   3'- -CCGCUGG-CGCUGGCGCUGgCGG--CCGU- -5'
6489	5'	-64.1	NC_001847.1	+	119890	0.85	0.033207
	Target:  5'- cGGCGAUCGCGugCGUGgccgccgccGCCGCCGGCGc -3' miRNA:   3'- -CCGCUGGCGCugGCGC---------UGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	132348	0.85	0.034074
	Target:  5'- uGGCGGCCGCGcUCGCGgcccuggagGCCGCCGGCGg -3' miRNA:   3'- -CCGCUGGCGCuGGCGC---------UGGCGGCCGU- -5'
6489	5'	-64.1	NC_001847.1	+	18978	0.84	0.03681
	Target:  5'- cGCGGCCGCGGcgcCCGCGGCCGCCaGCGc -3' miRNA:   3'- cCGCUGGCGCU---GGCGCUGGCGGcCGU- -5'
6489	5'	-64.1	NC_001847.1	+	35557	0.84	0.039762
	Target:  5'- aGGCGGCgCGCGACCGCGACgagggCGCCGGg- -3' miRNA:   3'- -CCGCUG-GCGCUGGCGCUG-----GCGGCCgu -5'
6489	5'	-64.1	NC_001847.1	+	15017	0.83	0.045204
	Target:  5'- cGGUggGGCCGCGcgaGCCGCGGCCGCCGGgCGa -3' miRNA:   3'- -CCG--CUGGCGC---UGGCGCUGGCGGCC-GU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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