miRNA display CGI


Results 1 - 20 of 1253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6489 5' -64.1 NC_001847.1 + 300 0.68 0.453475
Target:  5'- gGGCG-CCGUccCCGCGccCCGCCGGa- -3'
miRNA:   3'- -CCGCuGGCGcuGGCGCu-GGCGGCCgu -5'
6489 5' -64.1 NC_001847.1 + 426 0.67 0.479841
Target:  5'- gGGCGGgCggGCGGCgGCGGCgGC-GGCAg -3'
miRNA:   3'- -CCGCUgG--CGCUGgCGCUGgCGgCCGU- -5'
6489 5' -64.1 NC_001847.1 + 458 0.77 0.117758
Target:  5'- cGGCGGCgGCGGCgGCGGCgGC-GGCAg -3'
miRNA:   3'- -CCGCUGgCGCUGgCGCUGgCGgCCGU- -5'
6489 5' -64.1 NC_001847.1 + 486 0.67 0.497828
Target:  5'- aGCGGCgGCGGCgggGCGGCCGCgCGcCAa -3'
miRNA:   3'- cCGCUGgCGCUGg--CGCUGGCG-GCcGU- -5'
6489 5' -64.1 NC_001847.1 + 488 0.74 0.177708
Target:  5'- gGGUGcCCGCGccuCCGCGccuGCUGCCGGCc -3'
miRNA:   3'- -CCGCuGGCGCu--GGCGC---UGGCGGCCGu -5'
6489 5' -64.1 NC_001847.1 + 597 0.71 0.287762
Target:  5'- uGGCccuCCGCGGCCGCu-CCGCagCGGCGc -3'
miRNA:   3'- -CCGcu-GGCGCUGGCGcuGGCG--GCCGU- -5'
6489 5' -64.1 NC_001847.1 + 616 0.71 0.306603
Target:  5'- cGCGccCCGUGuaccaccacaugcGCCGCGGCCGCaCGGCc -3'
miRNA:   3'- cCGCu-GGCGC-------------UGGCGCUGGCG-GCCGu -5'
6489 5' -64.1 NC_001847.1 + 760 0.69 0.402423
Target:  5'- gGGCGAggccggcCCGCcGCCgGCGG-CGCCGGCc -3'
miRNA:   3'- -CCGCU-------GGCGcUGG-CGCUgGCGGCCGu -5'
6489 5' -64.1 NC_001847.1 + 883 0.88 0.01979
Target:  5'- cGGCGGcCCGCGccggggccGCCGCGGCCGCCGGCc -3'
miRNA:   3'- -CCGCU-GGCGC--------UGGCGCUGGCGGCCGu -5'
6489 5' -64.1 NC_001847.1 + 957 0.66 0.525353
Target:  5'- gGGaCGACUGCGcCgGC-ACCcggGCCGGCGg -3'
miRNA:   3'- -CC-GCUGGCGCuGgCGcUGG---CGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 997 0.7 0.327772
Target:  5'- cGCGGCgGCGGCaCGCGcuccaccaggccGCCGCCcgcGGCGc -3'
miRNA:   3'- cCGCUGgCGCUG-GCGC------------UGGCGG---CCGU- -5'
6489 5' -64.1 NC_001847.1 + 1095 0.79 0.087408
Target:  5'- gGGCG-CCGCGGCCGCGggcggcGCCGCCgcGGCc -3'
miRNA:   3'- -CCGCuGGCGCUGGCGC------UGGCGG--CCGu -5'
6489 5' -64.1 NC_001847.1 + 1140 0.7 0.334828
Target:  5'- cGGCGgcGCCuCGGCgCGCGGCU-CCGGCAg -3'
miRNA:   3'- -CCGC--UGGcGCUG-GCGCUGGcGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 1170 0.79 0.091891
Target:  5'- cGCGGCCGCGcagaaggccACCGCcGCgGCCGGCAg -3'
miRNA:   3'- cCGCUGGCGC---------UGGCGcUGgCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 1356 0.74 0.19994
Target:  5'- cGCGGCCauguccuuGCGcCCGuCGAgCGCCGGCAg -3'
miRNA:   3'- cCGCUGG--------CGCuGGC-GCUgGCGGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 1411 0.71 0.307269
Target:  5'- aGGCaGGCaCGCGGCCccGCGccCCGCCaGGCAc -3'
miRNA:   3'- -CCG-CUG-GCGCUGG--CGCu-GGCGG-CCGU- -5'
6489 5' -64.1 NC_001847.1 + 1413 0.7 0.327772
Target:  5'- cGGCGGCaCGgGcACCGCgGugCGCgGGCc -3'
miRNA:   3'- -CCGCUG-GCgC-UGGCG-CugGCGgCCGu -5'
6489 5' -64.1 NC_001847.1 + 1614 0.7 0.341994
Target:  5'- cGGCGcACUGCG-CCGCGgcagcACCG-CGGCGc -3'
miRNA:   3'- -CCGC-UGGCGCuGGCGC-----UGGCgGCCGU- -5'
6489 5' -64.1 NC_001847.1 + 1726 0.75 0.165446
Target:  5'- cGCcGCCGCG-CCGCGGCCaGCCGcGCGc -3'
miRNA:   3'- cCGcUGGCGCuGGCGCUGG-CGGC-CGU- -5'
6489 5' -64.1 NC_001847.1 + 1930 0.75 0.173533
Target:  5'- cGGCG-CgGCGGCCacucgGGCCGCCGGCGc -3'
miRNA:   3'- -CCGCuGgCGCUGGcg---CUGGCGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.